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The map label for this gene is ubiD

Identifier: 27364377

GI number: 27364377

Start: 940694

End: 942547

Strand: Reverse

Name: ubiD

Synonym: VV1_0935

Alternate gene names: 27364377

Gene position: 942547-940694 (Counterclockwise)

Preceding gene: 326423783

Following gene: 27364376

Centisome position: 28.72

GC content: 47.2

Gene sequence:

>1854_bases
ATGAGTTTTAAGGATTTACGCGACTTCCTCAATCACCTAGAGAAGAAAGGGCAATTAAAGCGCATTACTCACCCAGTTGA
TCCCGCCTATGAAATGACCGAGATCAGTGACCGAACACTACGAGCGGGCGGCCCGGCTTTACTGTTCGAAAACCCAATTG
GTTACGATATCCCAGTGTTGACAAACTTATTTGGTACCGCTGAGCGTGTTGCGATGGGGATGGGAAGAGAACAAGTTAAA
GAATTGCGTGAGGTTGGGCAGTGGCTTGCCTATCTCAAAGAACCTGAGCCACCTAAAGGTTTTAAAGACGCTTTGGATAA
GCTGCCTGTGTTCAAACAAGTTTTAAATATGCCTGTGAAGCGTTTACGCAAAGCAGCATGCCAAGAAGTGGTTTGGCAAG
GTGAAGAGGTTGATCTGGACAAGATTCCCGTGATGAGCTGCTGGCAAGATGATGTTGCGCCACTGTTAACTTGGGGATTA
ACCATTACGCGAGGTCCCAACAAGAAGCGCCAAAATTTGGGAATCTACCGTCAACAGAAAATCGCGAAAAACAAAATCAT
CATGCGCTGGCTAGCACACCGAGGTGGGGCTTTGGATCTGCGTGACTGGATGGAAAAATACCCCGGAAAACCTTTTCCTG
TGTCGGTTGCATTCGGTGCGGATCCTGCCACCATTCTAGGGGCGGTGACACCAGTACCAGATACACTTTCGGAATATGCT
TTTGCAGGTCTCTTGCGTGGGAGTAAAACCGAAGTGGTTAAGTCCGTCAGCAATGATCTCGAAATCCCCGCGAGTGCAGA
GATTGTGCTCGAAGGCTATATCGACCCAAACGAGTATGCCGATGAGGGGCCTTATGGTGACCATACTGGCTATTACAATG
AAAAGGAAAAGCACCACGTTTTTACCATCACGCATATTACGATGCGTAAAGAGCCTATCTATCATAGTACTTACACTGGT
CGCCCACCAGATGAACCCGCGGTATTAGGGGTGGCCCTCAATGAAGTTTTCGTGCCAATCTTGCAAAAGCAGTTCCCTGA
AATAGAAGATTTCTATCTGCCACCGGAAGGGTGCTCTTACCGAATGGCTGTCGTGACGATGAAAAAGCAATACCCAGGCC
ATGCGAAACGCGTGATGATGGGCGTTTGGTCTTTTTTACGTCAGTTCATGTATACCAAGTATGTAGTGGTGTGTGATGAA
TCAGTGAATGCGCGTGATTGGGATGATGTCGTTAAGGCGATGACGGAAAATATGAACCCAATACTCGACTCTCTATTTAT
TGAGAGCACGCCGATAGATTCTCTCGATTTTGCCTCACCTGTGGCTGGGTTAGGTTCAAAGATGGGCCTAGATGCCACCA
TAAAATGGGAGGCGGAGCTAGCATTGCAAGGGGCGACGGTGTCCACAGAGTTTGCGTCGCAGATTGGTATCGATGTGAAT
GCACTTAAAGCGGTCCATCCTCTAATATCAGATATCTATGTGCCAGCGGTTGCGAGTGGTCAGTTTATGGTTGTTAAAAT
CAATAAAACCCATGCTGGGCAATGCAAAGAAGTGGTAGAAAGCTTATGGCAAGTCGAGAGCGTCAAACAGCGCAATAAAT
TTATCGTGGTGTGTGATGACGATGTCAAAGCCGATGATTGGCATGACATCATCTGGGCGATCACTACGCGGATGGATCCA
GCACGCGATACGTTGAAGATAGACGGTAGTGAGAGTTGTAGCGCTAAATTGGTTTTTGATGCCACCAATAAGTACCCTGA
AGAAATCACGAGAGAATGGGGAAAACCGATTAAAAAAGATCCTAAACTTGTGGCTAAAGTCGATGCGCTTTGGCAGGAGT
TCGGTATTCTATGA

Upstream 100 bases:

>100_bases
TAAAATAAAAGTTGCAAAATAGCCTCACAAAATTAGCGGATCCTATCGAAATGCGTTTTGTTATACTGCCTCAAGTTTAC
CCACTTCATGTAGAAGGCCT

Downstream 100 bases:

>100_bases
GCCATATGGTACGCCTTCTTCCTATGGATATCTCTTTTGTCGTTAGAGAAGGTGAAACGGTTTTGGACGCTGCGCTCAAC
AATAACATTGCGTTTCCAAA

Product: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase

Number of amino acids: Translated: 617; Mature: 616

Protein sequence:

>617_residues
MSFKDLRDFLNHLEKKGQLKRITHPVDPAYEMTEISDRTLRAGGPALLFENPIGYDIPVLTNLFGTAERVAMGMGREQVK
ELREVGQWLAYLKEPEPPKGFKDALDKLPVFKQVLNMPVKRLRKAACQEVVWQGEEVDLDKIPVMSCWQDDVAPLLTWGL
TITRGPNKKRQNLGIYRQQKIAKNKIIMRWLAHRGGALDLRDWMEKYPGKPFPVSVAFGADPATILGAVTPVPDTLSEYA
FAGLLRGSKTEVVKSVSNDLEIPASAEIVLEGYIDPNEYADEGPYGDHTGYYNEKEKHHVFTITHITMRKEPIYHSTYTG
RPPDEPAVLGVALNEVFVPILQKQFPEIEDFYLPPEGCSYRMAVVTMKKQYPGHAKRVMMGVWSFLRQFMYTKYVVVCDE
SVNARDWDDVVKAMTENMNPILDSLFIESTPIDSLDFASPVAGLGSKMGLDATIKWEAELALQGATVSTEFASQIGIDVN
ALKAVHPLISDIYVPAVASGQFMVVKINKTHAGQCKEVVESLWQVESVKQRNKFIVVCDDDVKADDWHDIIWAITTRMDP
ARDTLKIDGSESCSAKLVFDATNKYPEEITREWGKPIKKDPKLVAKVDALWQEFGIL

Sequences:

>Translated_617_residues
MSFKDLRDFLNHLEKKGQLKRITHPVDPAYEMTEISDRTLRAGGPALLFENPIGYDIPVLTNLFGTAERVAMGMGREQVK
ELREVGQWLAYLKEPEPPKGFKDALDKLPVFKQVLNMPVKRLRKAACQEVVWQGEEVDLDKIPVMSCWQDDVAPLLTWGL
TITRGPNKKRQNLGIYRQQKIAKNKIIMRWLAHRGGALDLRDWMEKYPGKPFPVSVAFGADPATILGAVTPVPDTLSEYA
FAGLLRGSKTEVVKSVSNDLEIPASAEIVLEGYIDPNEYADEGPYGDHTGYYNEKEKHHVFTITHITMRKEPIYHSTYTG
RPPDEPAVLGVALNEVFVPILQKQFPEIEDFYLPPEGCSYRMAVVTMKKQYPGHAKRVMMGVWSFLRQFMYTKYVVVCDE
SVNARDWDDVVKAMTENMNPILDSLFIESTPIDSLDFASPVAGLGSKMGLDATIKWEAELALQGATVSTEFASQIGIDVN
ALKAVHPLISDIYVPAVASGQFMVVKINKTHAGQCKEVVESLWQVESVKQRNKFIVVCDDDVKADDWHDIIWAITTRMDP
ARDTLKIDGSESCSAKLVFDATNKYPEEITREWGKPIKKDPKLVAKVDALWQEFGIL
>Mature_616_residues
SFKDLRDFLNHLEKKGQLKRITHPVDPAYEMTEISDRTLRAGGPALLFENPIGYDIPVLTNLFGTAERVAMGMGREQVKE
LREVGQWLAYLKEPEPPKGFKDALDKLPVFKQVLNMPVKRLRKAACQEVVWQGEEVDLDKIPVMSCWQDDVAPLLTWGLT
ITRGPNKKRQNLGIYRQQKIAKNKIIMRWLAHRGGALDLRDWMEKYPGKPFPVSVAFGADPATILGAVTPVPDTLSEYAF
AGLLRGSKTEVVKSVSNDLEIPASAEIVLEGYIDPNEYADEGPYGDHTGYYNEKEKHHVFTITHITMRKEPIYHSTYTGR
PPDEPAVLGVALNEVFVPILQKQFPEIEDFYLPPEGCSYRMAVVTMKKQYPGHAKRVMMGVWSFLRQFMYTKYVVVCDES
VNARDWDDVVKAMTENMNPILDSLFIESTPIDSLDFASPVAGLGSKMGLDATIKWEAELALQGATVSTEFASQIGIDVNA
LKAVHPLISDIYVPAVASGQFMVVKINKTHAGQCKEVVESLWQVESVKQRNKFIVVCDDDVKADDWHDIIWAITTRMDPA
RDTLKIDGSESCSAKLVFDATNKYPEEITREWGKPIKKDPKLVAKVDALWQEFGIL

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family

Homologues:

Organism=Escherichia coli, GI1790277, Length=459, Percent_Identity=75.8169934640523, Blast_Score=741, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=338, Percent_Identity=26.3313609467456, Blast_Score=106, Evalue=8e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UBID_VIBVU (Q8DDP0)

Other databases:

- EMBL:   AE016795
- RefSeq:   NP_759905.1
- ProteinModelPortal:   Q8DDP0
- SMR:   Q8DDP0
- GeneID:   1177875
- GenomeReviews:   AE016795_GR
- KEGG:   vvu:VV1_0935
- HOGENOM:   HBG564733
- OMA:   LNRIYTP
- ProtClustDB:   CLSK873932
- BioCyc:   VVUL216895:VV1_0935-MONOMER
- HAMAP:   MF_01636
- InterPro:   IPR002830
- InterPro:   IPR009002
- TIGRFAMs:   TIGR00148

Pfam domain/function: PF01977 UbiD; SSF50475 FMN_binding

EC number: 4.1.1.-

Molecular weight: Translated: 69467; Mature: 69335

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFKDLRDFLNHLEKKGQLKRITHPVDPAYEMTEISDRTLRAGGPALLFENPIGYDIPVL
CCHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHCCCCCCCCCCCEEEECCCCCCCHHHH
TNLFGTAERVAMGMGREQVKELREVGQWLAYLKEPEPPKGFKDALDKLPVFKQVLNMPVK
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCHHHHHHHHHHHH
RLRKAACQEVVWQGEEVDLDKIPVMSCWQDDVAPLLTWGLTITRGPNKKRQNLGIYRQQK
HHHHHHHHHHHHCCCCCCCCCCCCHHHCHHHHHHHHHHCEEEECCCCCHHHHCCHHHHHH
IAKNKIIMRWLAHRGGALDLRDWMEKYPGKPFPVSVAFGADPATILGAVTPVPDTLSEYA
HHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEECCCHHHHHHCCCCCCHHHHHHH
FAGLLRGSKTEVVKSVSNDLEIPASAEIVLEGYIDPNEYADEGPYGDHTGYYNEKEKHHV
HHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCHHCCCCCCCCCCCCCCCCCCCCEE
FTITHITMRKEPIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIEDFYLPPEGCSY
EEEEEEEEECCCCEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCE
RMAVVTMKKQYPGHAKRVMMGVWSFLRQFMYTKYVVVCDESVNARDWDDVVKAMTENMNP
EEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHCCHH
ILDSLFIESTPIDSLDFASPVAGLGSKMGLDATIKWEAELALQGATVSTEFASQIGIDVN
HHHHHHHCCCCCCCCHHHCHHHHCCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHCCCHH
ALKAVHPLISDIYVPAVASGQFMVVKINKTHAGQCKEVVESLWQVESVKQRNKFIVVCDD
HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC
DVKADDWHDIIWAITTRMDPARDTLKIDGSESCSAKLVFDATNKYPEEITREWGKPIKKD
CCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCC
PKLVAKVDALWQEFGIL
CHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SFKDLRDFLNHLEKKGQLKRITHPVDPAYEMTEISDRTLRAGGPALLFENPIGYDIPVL
CHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHCCCCCCCCCCCEEEECCCCCCCHHHH
TNLFGTAERVAMGMGREQVKELREVGQWLAYLKEPEPPKGFKDALDKLPVFKQVLNMPVK
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCHHHHHHHHHHHH
RLRKAACQEVVWQGEEVDLDKIPVMSCWQDDVAPLLTWGLTITRGPNKKRQNLGIYRQQK
HHHHHHHHHHHHCCCCCCCCCCCCHHHCHHHHHHHHHHCEEEECCCCCHHHHCCHHHHHH
IAKNKIIMRWLAHRGGALDLRDWMEKYPGKPFPVSVAFGADPATILGAVTPVPDTLSEYA
HHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEECCCHHHHHHCCCCCCHHHHHHH
FAGLLRGSKTEVVKSVSNDLEIPASAEIVLEGYIDPNEYADEGPYGDHTGYYNEKEKHHV
HHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCHHCCCCCCCCCCCCCCCCCCCCEE
FTITHITMRKEPIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIEDFYLPPEGCSY
EEEEEEEEECCCCEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCE
RMAVVTMKKQYPGHAKRVMMGVWSFLRQFMYTKYVVVCDESVNARDWDDVVKAMTENMNP
EEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHCCHH
ILDSLFIESTPIDSLDFASPVAGLGSKMGLDATIKWEAELALQGATVSTEFASQIGIDVN
HHHHHHHCCCCCCCCHHHCHHHHCCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHCCCHH
ALKAVHPLISDIYVPAVASGQFMVVKINKTHAGQCKEVVESLWQVESVKQRNKFIVVCDD
HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC
DVKADDWHDIIWAITTRMDPARDTLKIDGSESCSAKLVFDATNKYPEEITREWGKPIKKD
CCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCC
PKLVAKVDALWQEFGIL
CHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA