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The map label for this gene is rmuC [H]

Identifier: 27364357

GI number: 27364357

Start: 923188

End: 924774

Strand: Reverse

Name: rmuC [H]

Synonym: VV1_0910

Alternate gene names: 27364357

Gene position: 924774-923188 (Counterclockwise)

Preceding gene: 27364359

Following gene: 27364356

Centisome position: 28.18

GC content: 46.0

Gene sequence:

>1587_bases
ATGCAATGGATTATCGATAACCAAGCTTCCCTTCTGATGACCCTTTTTTCTTCGCTATTGACCGCAATTTTAGCCGCTTG
GTGGCAGCGCCAGAAGCTTGCGGTGGTGAATCAGTTGTTGCAACAACAGCTAGAAAGTGAACAACGTTTATCTGCCAGTA
AAATCGAACAACTGCAGCACGGAATGCAACAGCTCCAAACAGAATTAGATGATTATGATCAGGAGCGCGATCAGGCAGCT
TATGAGGTCAAACAGACTCATGGTAAGTTGATGGCCGCAATTGAAAAACTACGCTACTTCGATGCGGTAAAACAAGAGCG
TCAACAATACTTTGATGAGTTAACGGCGCTAAGGGAATGCAACGCAAAGTTAGAGACACAACTGCGTGAGCAGCAGGCTC
GCCATGAGCAACTGACTCAAGCGAATCAGGAGAAGCTGCAAATTCTGGAACAAGCAGAGGTGCGCTTGAAACAGCAGTTT
GAGCATCTTGCTAATCAACTTTTTGAAGAGAAAAGCGCTAAGGTTGATCAACAAAACCGCCTCAGTTTAGAAGGACTATT
GTCACCCTTAAAAGAGCAGTTAGAAGGCTTTAAGAAGCAGGTCAATGATAGTTTTAGTCATGAGGCAAAAGAACGTCATA
CGCTCGTGCATGAGTTGAAAAATTTACAACGCTTGAATGAGCAGATGACTCGTGAAGCCGTGAATCTCACGCAAGCGCTC
AAAGGAGATAATAAACAGCAAGGAAACTGGGGAGAAGTGGTGCTGGCGCGTGTGCTTGCGGAATCAGGATTACGTGAAGG
GCATGAATACCAAACTCAGGTCAGTTTGCAAAATGAAGCGGGTAAACGCTATCAACCCGATGTGATCGTCTATTTGCCTC
AAGATAAGCAAGTGGTGATCGACTCCAAAATGACGTTGGTAGCCTATGAGCGCTATTTCCATGCGGAGTCGGACAGCGAG
CGCGACATTGAGTTGTCCAATCACCTTGCTGCGATTCGTGCGCACATTAAAGGGTTAAGTATAAAAGATTATCACCAGCT
CAGAGGTATTCACTCCTTGGACTATGTGCTGATGTTTATACCGGTCGAGCCCGCTTTCCAATTGGCAATACAAGCTGATC
CGAGCCTCGTCAAAGACGCGATGGAGCAAAATATCATCTTGGTGAGTCCAACCACGTTACTGGTTGCTTTGAGAACCATT
GATAACCTCTGGCGCAATGAGCGTCAGAGCCAGAACGCGAAGATCATTGCACAGCGAGCAAGCAAGCTATACGACAAGCT
GCGCTTGTTTGTTGATGATATGCAAAACTTAGGCGGAGCGCTGGATAAAGCTAACCAAAGTTACCAAGGGGCAATGAACA
AATTAGTGACCGGGCGAGGAAATGTCATTCGTCAGGCTGAAAGTTTCAAAGAGCTGGGTGTTGAAGTCAAACGCCCTATC
TCGGCGGATTTAACTCAATTAGCACAAAATGACTCTTTAGTAGAAAGACATCCCGTTGAGGATAAAGTAAACTATTCGAC
CGCAGTCTTGGGCCAAGAAAACCATTTCGGCCCTCAATCGAACCGCACTGCCCAAGAGGAAAAATAA

Upstream 100 bases:

>100_bases
CACCTAGTGTAAGCGAGGATTTTCTGTGCAACAAACTGGACATTTATCCAGTATGTAAATACCATTGAAACACGCATCTC
TTTTCTTAGAACGCCTTACT

Downstream 100 bases:

>100_bases
TGACGGACATCAGCGTGCAATCGAATACAGCTTTAGAATCATCAGAAACCACGCATTTTGGTTTCACTACCGTAGCGAAA
GAAGAAAAAGTCGCTAAGGT

Product: DNA recombination protein RmuC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 528; Mature: 528

Protein sequence:

>528_residues
MQWIIDNQASLLMTLFSSLLTAILAAWWQRQKLAVVNQLLQQQLESEQRLSASKIEQLQHGMQQLQTELDDYDQERDQAA
YEVKQTHGKLMAAIEKLRYFDAVKQERQQYFDELTALRECNAKLETQLREQQARHEQLTQANQEKLQILEQAEVRLKQQF
EHLANQLFEEKSAKVDQQNRLSLEGLLSPLKEQLEGFKKQVNDSFSHEAKERHTLVHELKNLQRLNEQMTREAVNLTQAL
KGDNKQQGNWGEVVLARVLAESGLREGHEYQTQVSLQNEAGKRYQPDVIVYLPQDKQVVIDSKMTLVAYERYFHAESDSE
RDIELSNHLAAIRAHIKGLSIKDYHQLRGIHSLDYVLMFIPVEPAFQLAIQADPSLVKDAMEQNIILVSPTTLLVALRTI
DNLWRNERQSQNAKIIAQRASKLYDKLRLFVDDMQNLGGALDKANQSYQGAMNKLVTGRGNVIRQAESFKELGVEVKRPI
SADLTQLAQNDSLVERHPVEDKVNYSTAVLGQENHFGPQSNRTAQEEK

Sequences:

>Translated_528_residues
MQWIIDNQASLLMTLFSSLLTAILAAWWQRQKLAVVNQLLQQQLESEQRLSASKIEQLQHGMQQLQTELDDYDQERDQAA
YEVKQTHGKLMAAIEKLRYFDAVKQERQQYFDELTALRECNAKLETQLREQQARHEQLTQANQEKLQILEQAEVRLKQQF
EHLANQLFEEKSAKVDQQNRLSLEGLLSPLKEQLEGFKKQVNDSFSHEAKERHTLVHELKNLQRLNEQMTREAVNLTQAL
KGDNKQQGNWGEVVLARVLAESGLREGHEYQTQVSLQNEAGKRYQPDVIVYLPQDKQVVIDSKMTLVAYERYFHAESDSE
RDIELSNHLAAIRAHIKGLSIKDYHQLRGIHSLDYVLMFIPVEPAFQLAIQADPSLVKDAMEQNIILVSPTTLLVALRTI
DNLWRNERQSQNAKIIAQRASKLYDKLRLFVDDMQNLGGALDKANQSYQGAMNKLVTGRGNVIRQAESFKELGVEVKRPI
SADLTQLAQNDSLVERHPVEDKVNYSTAVLGQENHFGPQSNRTAQEEK
>Mature_528_residues
MQWIIDNQASLLMTLFSSLLTAILAAWWQRQKLAVVNQLLQQQLESEQRLSASKIEQLQHGMQQLQTELDDYDQERDQAA
YEVKQTHGKLMAAIEKLRYFDAVKQERQQYFDELTALRECNAKLETQLREQQARHEQLTQANQEKLQILEQAEVRLKQQF
EHLANQLFEEKSAKVDQQNRLSLEGLLSPLKEQLEGFKKQVNDSFSHEAKERHTLVHELKNLQRLNEQMTREAVNLTQAL
KGDNKQQGNWGEVVLARVLAESGLREGHEYQTQVSLQNEAGKRYQPDVIVYLPQDKQVVIDSKMTLVAYERYFHAESDSE
RDIELSNHLAAIRAHIKGLSIKDYHQLRGIHSLDYVLMFIPVEPAFQLAIQADPSLVKDAMEQNIILVSPTTLLVALRTI
DNLWRNERQSQNAKIIAQRASKLYDKLRLFVDDMQNLGGALDKANQSYQGAMNKLVTGRGNVIRQAESFKELGVEVKRPI
SADLTQLAQNDSLVERHPVEDKVNYSTAVLGQENHFGPQSNRTAQEEK

Specific function: Involved in DNA recombination [H]

COG id: COG1322

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rmuC family [H]

Homologues:

Organism=Escherichia coli, GI1790266, Length=377, Percent_Identity=61.2732095490716, Blast_Score=472, Evalue=1e-134,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003798 [H]

Pfam domain/function: PF02646 RmuC [H]

EC number: NA

Molecular weight: Translated: 60736; Mature: 60736

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCCCCHHHHCCCCCCCCCHHHEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHCCCCHHHHCCCCCCCCCHHHEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]