Click here to switch to the map view.

The map label for this gene is rbn [C]

Identifier: 27364333

GI number: 27364333

Start: 894448

End: 895389

Strand: Reverse

Name: rbn [C]

Synonym: VV1_0885

Alternate gene names: 27364333

Gene position: 895389-894448 (Counterclockwise)

Preceding gene: 27364335

Following gene: 27364332

Centisome position: 27.28

GC content: 46.82

Gene sequence:

>942_bases
ATGAACCAGTTGTTTGGCAGTGACAAGTTGAGATTGCCGCAAAGGGCGCAAGCGGGCATTGCATTTGTTCGTTATTTGAT
AGCGCGCATGAATCATGACCGGATTAATGTGAATGCCGGTTACTTGGCGTATATCACGCTACTTTCGATTGTTCCTATGC
TCACCGTTCTCTTATCCATTTTGTCGAAGTTTTCCGTTTTTGAGAACGTTGGTAGCGTATTGCAAAGTTTCATTATCAAT
AACTTTGTACCCGCATCGGGAGACGCTGTTCATGCGGCATTGCAAGAGTTTATCGCGAACACGGGCAAAATGACGGCGGT
GGGGGCGGCGTTTCTGTTTGTGGCGGCGTTGATGCTGATTTCCAACATCGACAAGAATCTCAACTATATTTGGAGAGTGA
AGAAGAAGCGTCGTGCGGTGTTCTCGTTTTCGATGTATTGGATGGTGTTGACGCTTGGGCCGATTTTGGTCGGAGCCAGT
ATTGCGGCCACCTCTTACATCACCTCACTGCGTTTACTTGATAGTGAAGCGATCTCGACCGTTTACGATCAGTTGCTGCG
TTGGCTGCCATTTATCCTCTCTTCTTCGGCCTTCGTTGGTCTTTATTTGTTGGTGCCGAATAAGAAGGTGCAGTTTTCTC
ATGCTGTCGTTGGTGCCATGATTGCGGCGGTGTTATTTGAGCTTAGTAAAAAAGGTTTTGCTGCGTACATTACACAGTTT
CCGTCGTATCAACTGATTTACGGCGCTTTAGCCGCCATTCCGATTCTTTTTGTTTGGGTGTATCTCTGTTGGTTGATTGT
TTTAATCGGTGCTGAAGTCACCGCTGCACTCGGTGAACGGGAGCACTGGAGGCCAGCTGAGGACGTGATACAATCGTTGC
CAAACAATGACACAGAATTAGAAAAGGATACTCAACGTGATCGCTTTGATTCAGAGAGTTAG

Upstream 100 bases:

>100_bases
GACTGACAACCAGTCAGGGCAAAAATCGTTAGTAGTATGGTGATTAAATAAGGCATGCTTATTTCTCAATGATCTATTTA
AGTTACGTATGGTTAGGACT

Downstream 100 bases:

>100_bases
TGAAGCGGCTGTACGCGTCGATGGTGAAGTGGTTGGTCAGATAGACAAGGGACTTTTGGTGTTACTCGGCGTAGAAAAAG
ACGACGATGAGGCCAAAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MNQLFGSDKLRLPQRAQAGIAFVRYLIARMNHDRINVNAGYLAYITLLSIVPMLTVLLSILSKFSVFENVGSVLQSFIIN
NFVPASGDAVHAALQEFIANTGKMTAVGAAFLFVAALMLISNIDKNLNYIWRVKKKRRAVFSFSMYWMVLTLGPILVGAS
IAATSYITSLRLLDSEAISTVYDQLLRWLPFILSSSAFVGLYLLVPNKKVQFSHAVVGAMIAAVLFELSKKGFAAYITQF
PSYQLIYGALAAIPILFVWVYLCWLIVLIGAEVTAALGEREHWRPAEDVIQSLPNNDTELEKDTQRDRFDSES

Sequences:

>Translated_313_residues
MNQLFGSDKLRLPQRAQAGIAFVRYLIARMNHDRINVNAGYLAYITLLSIVPMLTVLLSILSKFSVFENVGSVLQSFIIN
NFVPASGDAVHAALQEFIANTGKMTAVGAAFLFVAALMLISNIDKNLNYIWRVKKKRRAVFSFSMYWMVLTLGPILVGAS
IAATSYITSLRLLDSEAISTVYDQLLRWLPFILSSSAFVGLYLLVPNKKVQFSHAVVGAMIAAVLFELSKKGFAAYITQF
PSYQLIYGALAAIPILFVWVYLCWLIVLIGAEVTAALGEREHWRPAEDVIQSLPNNDTELEKDTQRDRFDSES
>Mature_313_residues
MNQLFGSDKLRLPQRAQAGIAFVRYLIARMNHDRINVNAGYLAYITLLSIVPMLTVLLSILSKFSVFENVGSVLQSFIIN
NFVPASGDAVHAALQEFIANTGKMTAVGAAFLFVAALMLISNIDKNLNYIWRVKKKRRAVFSFSMYWMVLTLGPILVGAS
IAATSYITSLRLLDSEAISTVYDQLLRWLPFILSSSAFVGLYLLVPNKKVQFSHAVVGAMIAAVLFELSKKGFAAYITQF
PSYQLIYGALAAIPILFVWVYLCWLIVLIGAEVTAALGEREHWRPAEDVIQSLPNNDTELEKDTQRDRFDSES

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=281, Percent_Identity=49.1103202846975, Blast_Score=267, Evalue=7e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 34859; Mature: 34859

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHCCCCCCC
>Mature Secondary Structure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HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA