Click here to switch to the map view.

The map label for this gene is capD [H]

Identifier: 27364224

GI number: 27364224

Start: 776933

End: 778885

Strand: Reverse

Name: capD [H]

Synonym: VV1_0775

Alternate gene names: 27364224

Gene position: 778885-776933 (Counterclockwise)

Preceding gene: 326423760

Following gene: 27364223

Centisome position: 23.73

GC content: 46.29

Gene sequence:

>1953_bases
ATGGATAAGTTGGCTTACATATGGTCTTTACCTCGAGTGCATAAGCGCTTGATCAGTTTGGCCATAGATACCTTATTGAT
TACCTTTTCTTTTTTCATGGCAATCTGGGTGCGTCATGGTGAAGTGGCTGTTTCCGTTTCTGCGGAAACATGGCTAACAC
TCGCGGGCACGGTTGTTGTTACCCTAATCACCTTTACAAGGCTAGGCTTGTACCGAGCGGTACTGCGTTATCTCACCTTT
CATGCGCTTACCGTGGTGGTGCTTGGTGCGTTGATTTCCGCACTCTCGATCACAACTTTTGCGTATTTTTTAAATGCAGA
AGTGCCTCGTACAGTGCCTGTTATCTACATGACGTTTTTAGCACTGTTGTGCGGTGGTGCACGCATGATGGTGCGGTCAT
TAATCGTGCAGGCTAGCCGTAAAGGGTGCGAGCGTGTACTGATATATGGTGCGGGAAGTACAGGGCGCCAGTTGGCCATT
GCGCTTCGCAATGCGGAAACCTACCAAGTGAAAGGGTTTATTGATAATGATCCTTCTCTTGAAAACACCATTATCCAAGG
CTTAACCGTACACTCTTCCCAGCAAATTTCTCGTCTGGTTGAAAAGCAAGAAATTGAAAAAATCTTGCTGGCCATGCCAA
GAGCTACACGCTCTGAGCGTAAAGCCATTATTGACGGATTACTGCACTTACCCGTAGAAGTATTAACGGTTCCAGACTTT
AAAGACATCGTTAATGGCAACGCCACGGTCGATGAGCTTAAAGATGTTGCCATTGAAGACTTGCTCGGCCGAGACCCTGT
CGAGCCGAATCCTGAACTCATGAAAGCCAATATTCACGGTAAAGTGGTGATGGTCACTGGTGCAGGCGGTTCAATCGGTT
CTGAGCTTTGCCGTCAGATTGTACGCCAAAAGCCAAAGACCTTGATTCTATTTGAGTTATCAGAATACGGCTTGTACGAA
ATCGATAAAGAGCTGTCTGGCATGGTGGAAGCTATGCAGCTTGAAGTGGAAATCATACCCTTGTTAGGTTCTGTCCAGCG
AATCAACCGCCTAAGTGCCACAATGCGAGCGTTTGGCGTGCAAACGGTTTATCACGCAGCGGCTTATAAGCACGTTCCTT
TGGTGGAATACAATGTGGTGGAAGGGGTTCGCAACAACGTATTTGGCACCTACTACAGCGCGAAAGCCGCTATTGAAGCT
GGTGTGGAATCTTTTGTGTTGATCTCAACAGACAAAGCGGTGCGCCCAACCAATGTGATGGGCACTTCTAAACGTATGGC
AGAACTTGCACTGCAAGCCTTGGCGGCAAAAGAAAATGACAAAGTGAACGGTACGCGTTTTTGCATGGTGCGCTTTGGTA
ATGTGCTTGGCTCTTCAGGCTCGGTAATTCCACTGTTTAAGCGTCAAATTGAAGAAGGGCAGGCTATTACCGTTACCCAC
CCAGATATCATCCGCTACTTTATGACCATTCCTGAAGCTGCTCAGCTCGTTATACAAGCTGGTGCAATGGGCAAAGGTGG
CGATGTGTTTGTGTTGGATATGGGTGAGCCAGTTAAGATTGTCGATCTGGCGAAAAATCTTATTCAGTTATCAGGCCTTG
AAGTTAAGTCTTCTGATAATCCAAACGGTGATATCGAAATCAAATTTACAGGTCTTCGCCCTGGTGAAAAGCTCTATGAA
GAGTTATTGATTGGTGACAATGTGGAAGGCACCGATCACGAACGAATCATGACTGCGAACGAGCAATTTTTGCCGCTCGA
AGAGTTTAATCAGATTCTCGACAACTTAGACAAAGCCTGTCACGAGTTTGATCATGAAACCATCCGTCAAATCTTGTTGG
AAACACCTACAGGCTTTAACCCTACAGACGGTATTGGTGATTTAGTTTGGAATGCCAAGCGAAAGCTCAATGCCTCTAAA
GATAAGGTGGTTGAGATTAAAGTCACCGCTTAG

Upstream 100 bases:

>100_bases
GATAAAAAACTACTTTAAGTATATAATTATGACAGTCACGGGTAGCGGCTCGGGCGATGCAGTAAAAAAATCATAACGAT
ACTAAAAGTGAATACGATTT

Downstream 100 bases:

>100_bases
TCTATTCGCACTAGAAAAAAAGGGAGTAAGCCTTGGCAAGCTCCTTCTTTTTTCACGTCCTATTTCTCTTCAGCCATATC
GGCCTTTATCTTCCTTTCTT

Product: Nucleoside-diphosphate sugar epimerase/dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 650; Mature: 650

Protein sequence:

>650_residues
MDKLAYIWSLPRVHKRLISLAIDTLLITFSFFMAIWVRHGEVAVSVSAETWLTLAGTVVVTLITFTRLGLYRAVLRYLTF
HALTVVVLGALISALSITTFAYFLNAEVPRTVPVIYMTFLALLCGGARMMVRSLIVQASRKGCERVLIYGAGSTGRQLAI
ALRNAETYQVKGFIDNDPSLENTIIQGLTVHSSQQISRLVEKQEIEKILLAMPRATRSERKAIIDGLLHLPVEVLTVPDF
KDIVNGNATVDELKDVAIEDLLGRDPVEPNPELMKANIHGKVVMVTGAGGSIGSELCRQIVRQKPKTLILFELSEYGLYE
IDKELSGMVEAMQLEVEIIPLLGSVQRINRLSATMRAFGVQTVYHAAAYKHVPLVEYNVVEGVRNNVFGTYYSAKAAIEA
GVESFVLISTDKAVRPTNVMGTSKRMAELALQALAAKENDKVNGTRFCMVRFGNVLGSSGSVIPLFKRQIEEGQAITVTH
PDIIRYFMTIPEAAQLVIQAGAMGKGGDVFVLDMGEPVKIVDLAKNLIQLSGLEVKSSDNPNGDIEIKFTGLRPGEKLYE
ELLIGDNVEGTDHERIMTANEQFLPLEEFNQILDNLDKACHEFDHETIRQILLETPTGFNPTDGIGDLVWNAKRKLNASK
DKVVEIKVTA

Sequences:

>Translated_650_residues
MDKLAYIWSLPRVHKRLISLAIDTLLITFSFFMAIWVRHGEVAVSVSAETWLTLAGTVVVTLITFTRLGLYRAVLRYLTF
HALTVVVLGALISALSITTFAYFLNAEVPRTVPVIYMTFLALLCGGARMMVRSLIVQASRKGCERVLIYGAGSTGRQLAI
ALRNAETYQVKGFIDNDPSLENTIIQGLTVHSSQQISRLVEKQEIEKILLAMPRATRSERKAIIDGLLHLPVEVLTVPDF
KDIVNGNATVDELKDVAIEDLLGRDPVEPNPELMKANIHGKVVMVTGAGGSIGSELCRQIVRQKPKTLILFELSEYGLYE
IDKELSGMVEAMQLEVEIIPLLGSVQRINRLSATMRAFGVQTVYHAAAYKHVPLVEYNVVEGVRNNVFGTYYSAKAAIEA
GVESFVLISTDKAVRPTNVMGTSKRMAELALQALAAKENDKVNGTRFCMVRFGNVLGSSGSVIPLFKRQIEEGQAITVTH
PDIIRYFMTIPEAAQLVIQAGAMGKGGDVFVLDMGEPVKIVDLAKNLIQLSGLEVKSSDNPNGDIEIKFTGLRPGEKLYE
ELLIGDNVEGTDHERIMTANEQFLPLEEFNQILDNLDKACHEFDHETIRQILLETPTGFNPTDGIGDLVWNAKRKLNASK
DKVVEIKVTA
>Mature_650_residues
MDKLAYIWSLPRVHKRLISLAIDTLLITFSFFMAIWVRHGEVAVSVSAETWLTLAGTVVVTLITFTRLGLYRAVLRYLTF
HALTVVVLGALISALSITTFAYFLNAEVPRTVPVIYMTFLALLCGGARMMVRSLIVQASRKGCERVLIYGAGSTGRQLAI
ALRNAETYQVKGFIDNDPSLENTIIQGLTVHSSQQISRLVEKQEIEKILLAMPRATRSERKAIIDGLLHLPVEVLTVPDF
KDIVNGNATVDELKDVAIEDLLGRDPVEPNPELMKANIHGKVVMVTGAGGSIGSELCRQIVRQKPKTLILFELSEYGLYE
IDKELSGMVEAMQLEVEIIPLLGSVQRINRLSATMRAFGVQTVYHAAAYKHVPLVEYNVVEGVRNNVFGTYYSAKAAIEA
GVESFVLISTDKAVRPTNVMGTSKRMAELALQALAAKENDKVNGTRFCMVRFGNVLGSSGSVIPLFKRQIEEGQAITVTH
PDIIRYFMTIPEAAQLVIQAGAMGKGGDVFVLDMGEPVKIVDLAKNLIQLSGLEVKSSDNPNGDIEIKFTGLRPGEKLYE
ELLIGDNVEGTDHERIMTANEQFLPLEEFNQILDNLDKACHEFDHETIRQILLETPTGFNPTDGIGDLVWNAKRKLNASK
DKVVEIKVTA

Specific function: Required for the biosynthesis of type 1 capsular polysaccharide [H]

COG id: COG1086

COG function: function code MG; Predicted nucleoside-diphosphate sugar epimerases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003869 [H]

Pfam domain/function: PF02719 Polysacc_synt_2 [H]

EC number: NA

Molecular weight: Translated: 71696; Mature: 71696

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLAYIWSLPRVHKRLISLAIDTLLITFSFFMAIWVRHGEVAVSVSAETWLTLAGTVVV
CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHH
TLITFTRLGLYRAVLRYLTFHALTVVVLGALISALSITTFAYFLNAEVPRTVPVIYMTFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
ALLCGGARMMVRSLIVQASRKGCERVLIYGAGSTGRQLAIALRNAETYQVKGFIDNDPSL
HHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECCCEEEEEEEECCCCCH
ENTIIQGLTVHSSQQISRLVEKQEIEKILLAMPRATRSERKAIIDGLLHLPVEVLTVPDF
HHHHHHCEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEECCCH
KDIVNGNATVDELKDVAIEDLLGRDPVEPNPELMKANIHGKVVMVTGAGGSIGSELCRQI
HHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHEEEECCCEEEEEECCCCCHHHHHHHHH
VRQKPKTLILFELSEYGLYEIDKELSGMVEAMQLEVEIIPLLGSVQRINRLSATMRAFGV
HHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHHH
QTVYHAAAYKHVPLVEYNVVEGVRNNVFGTYYSAKAAIEAGVESFVLISTDKAVRPTNVM
HHHHHHHHHCCCCCEEHHHHHHHHHCCCEEHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
GTSKRMAELALQALAAKENDKVNGTRFCMVRFGNVLGSSGSVIPLFKRQIEEGQAITVTH
CCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHCCCCCEEHHHHHHHCCCCEEEEEC
PDIIRYFMTIPEAAQLVIQAGAMGKGGDVFVLDMGEPVKIVDLAKNLIQLSGLEVKSSDN
HHHHHHHHHCCHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEECCCC
PNGDIEIKFTGLRPGEKLYEELLIGDNVEGTDHERIMTANEQFLPLEEFNQILDNLDKAC
CCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHH
HEFDHETIRQILLETPTGFNPTDGIGDLVWNAKRKLNASKDKVVEIKVTA
HHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEC
>Mature Secondary Structure
MDKLAYIWSLPRVHKRLISLAIDTLLITFSFFMAIWVRHGEVAVSVSAETWLTLAGTVVV
CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHH
TLITFTRLGLYRAVLRYLTFHALTVVVLGALISALSITTFAYFLNAEVPRTVPVIYMTFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
ALLCGGARMMVRSLIVQASRKGCERVLIYGAGSTGRQLAIALRNAETYQVKGFIDNDPSL
HHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECCCEEEEEEEECCCCCH
ENTIIQGLTVHSSQQISRLVEKQEIEKILLAMPRATRSERKAIIDGLLHLPVEVLTVPDF
HHHHHHCEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEECCCH
KDIVNGNATVDELKDVAIEDLLGRDPVEPNPELMKANIHGKVVMVTGAGGSIGSELCRQI
HHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHEEEECCCEEEEEECCCCCHHHHHHHHH
VRQKPKTLILFELSEYGLYEIDKELSGMVEAMQLEVEIIPLLGSVQRINRLSATMRAFGV
HHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHHH
QTVYHAAAYKHVPLVEYNVVEGVRNNVFGTYYSAKAAIEAGVESFVLISTDKAVRPTNVM
HHHHHHHHHCCCCCEEHHHHHHHHHCCCEEHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
GTSKRMAELALQALAAKENDKVNGTRFCMVRFGNVLGSSGSVIPLFKRQIEEGQAITVTH
CCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHCCCCCEEHHHHHHHCCCCEEEEEC
PDIIRYFMTIPEAAQLVIQAGAMGKGGDVFVLDMGEPVKIVDLAKNLIQLSGLEVKSSDN
HHHHHHHHHCCHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEECCCC
PNGDIEIKFTGLRPGEKLYEELLIGDNVEGTDHERIMTANEQFLPLEEFNQILDNLDKAC
CCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHH
HEFDHETIRQILLETPTGFNPTDGIGDLVWNAKRKLNASKDKVVEIKVTA
HHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7961465 [H]