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The map label for this gene is sspB [H]

Identifier: 27364054

GI number: 27364054

Start: 607667

End: 608143

Strand: Reverse

Name: sspB [H]

Synonym: VV1_0593

Alternate gene names: 27364054

Gene position: 608143-607667 (Counterclockwise)

Preceding gene: 27364055

Following gene: 27364049

Centisome position: 18.53

GC content: 47.8

Gene sequence:

>477_bases
ATGGAAATTGCTCAAATGACCGCTCGCCGACCGTACATGCTAAGAGCATTTTACGATTGGCTAGTGGATAATGATTTAAC
TCCTCACCTCGTTGTGCAAGCAACATTGGCTGGAGTACGCGTACCTCAAGAGTTTATTCAAGATGGTCAGATTATTCTGA
ACATTGCCCCGCGTGCGGTTGGTAATCTTGAATTAGGTAACGACACCATCAGCTTTAATGCTCGTTTTGGTGGTCGTCCA
CATTCTGTGATTGTTCCGTTGTACGCGGTGCTGGCGATTTATGCTCGCGAAAATGGTGCTGGCACCATGTTCGAACCTGA
AGAAGCGTATACCAGTATCCCTGGGGCTGAGCAGGAAGAGGACGATGGTATTTGGTTGGAAGAGGAGCATTCAGCGCCTC
AACCTAGCATCGATTTTGATGATGAACCAGAGCCACCGAGACCCAAAGGTCGACCTAGCTTGAGAGTCGTTAAATAA

Upstream 100 bases:

>100_bases
AAAAGAGATCAAAGCTTACATGAACAAAGTGTTTGAGCGTGATTCATTCCTAGCTTCTTTAACTGAAGCAGAACGCGAGA
TGCGTTTGGTTCGTTAAGAT

Downstream 100 bases:

>100_bases
CGATGAACGTCAAATAATAAAAAAGCAGCGAAAGCTGCTTTTTTTGTGCCTGAGAGTTGAGCCATGCCGATATTGATCAT
TGGCTGGCATTATTCACTTG

Product: ClpXP protease specificity-enhancing factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MEIAQMTARRPYMLRAFYDWLVDNDLTPHLVVQATLAGVRVPQEFIQDGQIILNIAPRAVGNLELGNDTISFNARFGGRP
HSVIVPLYAVLAIYARENGAGTMFEPEEAYTSIPGAEQEEDDGIWLEEEHSAPQPSIDFDDEPEPPRPKGRPSLRVVK

Sequences:

>Translated_158_residues
MEIAQMTARRPYMLRAFYDWLVDNDLTPHLVVQATLAGVRVPQEFIQDGQIILNIAPRAVGNLELGNDTISFNARFGGRP
HSVIVPLYAVLAIYARENGAGTMFEPEEAYTSIPGAEQEEDDGIWLEEEHSAPQPSIDFDDEPEPPRPKGRPSLRVVK
>Mature_158_residues
MEIAQMTARRPYMLRAFYDWLVDNDLTPHLVVQATLAGVRVPQEFIQDGQIILNIAPRAVGNLELGNDTISFNARFGGRP
HSVIVPLYAVLAIYARENGAGTMFEPEEAYTSIPGAEQEEDDGIWLEEEHSAPQPSIDFDDEPEPPRPKGRPSLRVVK

Specific function: Seems to act in concert with sspA in the regulation of several proteins during exponential and stationary-phase growth. The exact function of sspB is not yet known [H]

COG id: COG2969

COG function: function code R; Stringent starvation protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789623, Length=137, Percent_Identity=64.963503649635, Blast_Score=179, Evalue=5e-47,

Paralogues:

None

Copy number: 297 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007481 [H]

Pfam domain/function: PF04386 SspB [H]

EC number: NA

Molecular weight: Translated: 17642; Mature: 17642

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIAQMTARRPYMLRAFYDWLVDNDLTPHLVVQATLAGVRVPQEFIQDGQIILNIAPRAV
CCCHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHCCCEEEEEECCCCC
GNLELGNDTISFNARFGGRPHSVIVPLYAVLAIYARENGAGTMFEPEEAYTSIPGAEQEE
CCEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCC
DDGIWLEEEHSAPQPSIDFDDEPEPPRPKGRPSLRVVK
CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
>Mature Secondary Structure
MEIAQMTARRPYMLRAFYDWLVDNDLTPHLVVQATLAGVRVPQEFIQDGQIILNIAPRAV
CCCHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHCCCEEEEEECCCCC
GNLELGNDTISFNARFGGRPHSVIVPLYAVLAIYARENGAGTMFEPEEAYTSIPGAEQEE
CCEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCC
DDGIWLEEEHSAPQPSIDFDDEPEPPRPKGRPSLRVVK
CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]