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The map label for this gene is cph2 [H]

Identifier: 27364013

GI number: 27364013

Start: 553987

End: 555762

Strand: Reverse

Name: cph2 [H]

Synonym: VV1_0551

Alternate gene names: 27364013

Gene position: 555762-553987 (Counterclockwise)

Preceding gene: 27364014

Following gene: 27364012

Centisome position: 16.93

GC content: 50.17

Gene sequence:

>1776_bases
ATGGACAAGCAGTTTGCATGGATAGCACACCTCGCAGAGCATTACGGCGCGATTATTTTAATGGCGGTGTTCGGCTATGT
TGTGGCTCGGCTACTGCATCTTCGCTATCAACGAGAGCTTGATACGCTGATTCTCGATTTGATGTCCCCAGTCTTATTAG
TCGATCTCACTGGGCAGCATGTTCTATTGGCAAACAGTGCGGCAATGCAGCAGCTTGGGGTTCGTCAGCTTAATCGAACG
TATCTTTTTCCGGCGACGTTCGCCATTGAACAGTTGTCCAATTCGTTAACCTCACTCTCTGGGCGTCAGTTCAGTCAGCT
TGCATTCGCCTGGCAAGCGTCGGAACATGAGCATCTTGACGTGGCGTTAAGTGGCCGCAAAGTTTACTACCGTGGTCAGC
ACTGCTGGCTACTGAATATCCAATTAAATCCTTCGAATCGCTCTCGTCATATGGACGATCTCGATGCCTTCTTAGTGGCG
CAATCAGCGTTAGATTCGCTAAGCGAACTGATCTGCCTGAAAGACAATGACGGCAAAATTCTGGCCACCAACCGCGCTTT
TGAACTGTTCTGGGAAGGGCGGAGAGATGAAGCGATTATGCCGGAAAGTCGCCTGATGAAAGGTCGTCAAAGCGAACGCC
GCTGGACGACTGATCCGCAAGGGCGCAGTTGTTTGTTGGAAGTTAATCAAAGTTTATTAATGACCAAAGCGGGTGAGCCG
ATTGGCACTCTTAGCATCAGCCACGATGTAACAGAGTGGCATGCCATGCAGCAAAATCTACGAGATGAGATGGAGCGCCG
CAAAGATACCGAGGTGGCGTTGGCACAGCGAGATACCATCTTACAAAACATTTTGGAAGCCAGCCCTGACTCGATCGGCA
TCTTCAATGAGAATCTGGTGTATCAAGCGTGTAACGAGCCATTCGTGCGAGCTCTGGGTATCGCGGACGTGAATGATCTC
ATCGGTAAGCGTTTGCAAGATGTGGTTCCCGGCGAGATGTACCAACGCCTCTCTGTGACGGACAGCCAGGTGTTGCACGA
AGGTAAGTCGCTGCGTTATATCGATAAAGTGCTCGACAGTAATGGAGAATACGCTTGGTATGACGTAGTGAAGTCACCGT
TTCGCGATCCCGCTTCAGGGACCAACGGTGTCTTGATCATGGCACGCGATATCTCTGAGCGTTATCTCGCCGAGCAGAAA
TTGGAAGCCGCAAACCTAGAGCTAGAAAAATTGAGCTTTATGGACAGCTTAACTCAAGTGTCCAACCGTCGCCGTTTTGA
TGAGCAACTGAATACTCTGTGGTTCCACCATGCCCGAGAAAAATTGCCGCTGACCATCATGCTCTGCGATATTGATTTCT
TCAAAGAGTTCAATGATCGCTATGGCCATCAAGCAGGAGATGAGGCGCTAATCCAAGTTGCGACCGTTTTTAGTCAAGTT
GTCAGCCGCTCGTCTGACTGTGTTGCGCGCTATGGTGGCGAGGAGTTTGCTCTATTGTTGCCCAACACTACGGCAGAAGG
GGCTTTGAAAGTGGCGGAGAAGATCCACGCTTACATCGCTGAAAGCAACATAGCCCATCAAGGTTCCAAGATTGCAGGGC
GAGTGACCATCAGTATTGGTTTGGTTTCTTACATTCCCTCCCCCGAAGATGTCCCTGATATGGGAGTGGCGCTTGCTGAT
AGCGCGCTTTATCAAGCCAAATCAGATGGCCGGAATCGCACTTGTGTTCATCCTATTTCTCTCTCTTCTGGCGAATCGCC
GTCCACTTTGGCATAG

Upstream 100 bases:

>100_bases
TTGGCCATTCTTTTGTCTATACTAAACCGCAATTAAAATGCGGAATTCACCCTCAATAGTTGGTATAGTCGCCGCACACA
CAATTCATCTAAGAGTGAGA

Downstream 100 bases:

>100_bases
GGTAATCCCCCTCACGCCAACTGATTTTCTATTGATTGCGCTTGTTGTGATTTCAATAGCTTAACCCTCAAGGGTAAACA
AGCTAAACTAAGTGCGTGAA

Product: sensory box/GGDEF family protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 591; Mature: 591

Protein sequence:

>591_residues
MDKQFAWIAHLAEHYGAIILMAVFGYVVARLLHLRYQRELDTLILDLMSPVLLVDLTGQHVLLANSAAMQQLGVRQLNRT
YLFPATFAIEQLSNSLTSLSGRQFSQLAFAWQASEHEHLDVALSGRKVYYRGQHCWLLNIQLNPSNRSRHMDDLDAFLVA
QSALDSLSELICLKDNDGKILATNRAFELFWEGRRDEAIMPESRLMKGRQSERRWTTDPQGRSCLLEVNQSLLMTKAGEP
IGTLSISHDVTEWHAMQQNLRDEMERRKDTEVALAQRDTILQNILEASPDSIGIFNENLVYQACNEPFVRALGIADVNDL
IGKRLQDVVPGEMYQRLSVTDSQVLHEGKSLRYIDKVLDSNGEYAWYDVVKSPFRDPASGTNGVLIMARDISERYLAEQK
LEAANLELEKLSFMDSLTQVSNRRRFDEQLNTLWFHHAREKLPLTIMLCDIDFFKEFNDRYGHQAGDEALIQVATVFSQV
VSRSSDCVARYGGEEFALLLPNTTAEGALKVAEKIHAYIAESNIAHQGSKIAGRVTISIGLVSYIPSPEDVPDMGVALAD
SALYQAKSDGRNRTCVHPISLSSGESPSTLA

Sequences:

>Translated_591_residues
MDKQFAWIAHLAEHYGAIILMAVFGYVVARLLHLRYQRELDTLILDLMSPVLLVDLTGQHVLLANSAAMQQLGVRQLNRT
YLFPATFAIEQLSNSLTSLSGRQFSQLAFAWQASEHEHLDVALSGRKVYYRGQHCWLLNIQLNPSNRSRHMDDLDAFLVA
QSALDSLSELICLKDNDGKILATNRAFELFWEGRRDEAIMPESRLMKGRQSERRWTTDPQGRSCLLEVNQSLLMTKAGEP
IGTLSISHDVTEWHAMQQNLRDEMERRKDTEVALAQRDTILQNILEASPDSIGIFNENLVYQACNEPFVRALGIADVNDL
IGKRLQDVVPGEMYQRLSVTDSQVLHEGKSLRYIDKVLDSNGEYAWYDVVKSPFRDPASGTNGVLIMARDISERYLAEQK
LEAANLELEKLSFMDSLTQVSNRRRFDEQLNTLWFHHAREKLPLTIMLCDIDFFKEFNDRYGHQAGDEALIQVATVFSQV
VSRSSDCVARYGGEEFALLLPNTTAEGALKVAEKIHAYIAESNIAHQGSKIAGRVTISIGLVSYIPSPEDVPDMGVALAD
SALYQAKSDGRNRTCVHPISLSSGESPSTLA
>Mature_591_residues
MDKQFAWIAHLAEHYGAIILMAVFGYVVARLLHLRYQRELDTLILDLMSPVLLVDLTGQHVLLANSAAMQQLGVRQLNRT
YLFPATFAIEQLSNSLTSLSGRQFSQLAFAWQASEHEHLDVALSGRKVYYRGQHCWLLNIQLNPSNRSRHMDDLDAFLVA
QSALDSLSELICLKDNDGKILATNRAFELFWEGRRDEAIMPESRLMKGRQSERRWTTDPQGRSCLLEVNQSLLMTKAGEP
IGTLSISHDVTEWHAMQQNLRDEMERRKDTEVALAQRDTILQNILEASPDSIGIFNENLVYQACNEPFVRALGIADVNDL
IGKRLQDVVPGEMYQRLSVTDSQVLHEGKSLRYIDKVLDSNGEYAWYDVVKSPFRDPASGTNGVLIMARDISERYLAEQK
LEAANLELEKLSFMDSLTQVSNRRRFDEQLNTLWFHHAREKLPLTIMLCDIDFFKEFNDRYGHQAGDEALIQVATVFSQV
VSRSSDCVARYGGEEFALLLPNTTAEGALKVAEKIHAYIAESNIAHQGSKIAGRVTISIGLVSYIPSPEDVPDMGVALAD
SALYQAKSDGRNRTCVHPISLSSGESPSTLA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=169, Percent_Identity=37.8698224852071, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI87081881, Length=225, Percent_Identity=33.3333333333333, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI1787262, Length=173, Percent_Identity=35.8381502890173, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI1786584, Length=182, Percent_Identity=32.967032967033, Blast_Score=96, Evalue=9e-21,
Organism=Escherichia coli, GI1787802, Length=212, Percent_Identity=33.9622641509434, Blast_Score=93, Evalue=6e-20,
Organism=Escherichia coli, GI87082007, Length=192, Percent_Identity=32.8125, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=36.5853658536585, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1788381, Length=167, Percent_Identity=34.7305389221557, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1788085, Length=173, Percent_Identity=31.2138728323699, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI87081977, Length=199, Percent_Identity=32.1608040201005, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1787056, Length=160, Percent_Identity=31.25, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1787541, Length=212, Percent_Identity=27.3584905660377, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI48994928, Length=159, Percent_Identity=27.0440251572327, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1788956, Length=173, Percent_Identity=30.635838150289, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 66419; Mature: 66419

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKQFAWIAHLAEHYGAIILMAVFGYVVARLLHLRYQRELDTLILDLMSPVLLVDLTGQH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCE
VLLANSAAMQQLGVRQLNRTYLFPATFAIEQLSNSLTSLSGRQFSQLAFAWQASEHEHLD
EEEECHHHHHHHHHHHHCCEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEE
VALSGRKVYYRGQHCWLLNIQLNPSNRSRHMDDLDAFLVAQSALDSLSELICLKDNDGKI
EEEECCEEEEECCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCEE
LATNRAFELFWEGRRDEAIMPESRLMKGRQSERRWTTDPQGRSCLLEVNQSLLMTKAGEP
EEECCEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
IGTLSISHDVTEWHAMQQNLRDEMERRKDTEVALAQRDTILQNILEASPDSIGIFNENLV
CEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCHH
YQACNEPFVRALGIADVNDLIGKRLQDVVPGEMYQRLSVTDSQVLHEGKSLRYIDKVLDS
HHHCCCHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHCC
NGEYAWYDVVKSPFRDPASGTNGVLIMARDISERYLAEQKLEAANLELEKLSFMDSLTQV
CCCEEHHHHHHCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
SNRRRFDEQLNTLWFHHAREKLPLTIMLCDIDFFKEFNDRYGHQAGDEALIQVATVFSQV
HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
VSRSSDCVARYGGEEFALLLPNTTAEGALKVAEKIHAYIAESNIAHQGSKIAGRVTISIG
HHCCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHCCCCEEEEEEEEEE
LVSYIPSPEDVPDMGVALADSALYQAKSDGRNRTCVHPISLSSGESPSTLA
HHEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MDKQFAWIAHLAEHYGAIILMAVFGYVVARLLHLRYQRELDTLILDLMSPVLLVDLTGQH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCE
VLLANSAAMQQLGVRQLNRTYLFPATFAIEQLSNSLTSLSGRQFSQLAFAWQASEHEHLD
EEEECHHHHHHHHHHHHCCEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEE
VALSGRKVYYRGQHCWLLNIQLNPSNRSRHMDDLDAFLVAQSALDSLSELICLKDNDGKI
EEEECCEEEEECCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCEE
LATNRAFELFWEGRRDEAIMPESRLMKGRQSERRWTTDPQGRSCLLEVNQSLLMTKAGEP
EEECCEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
IGTLSISHDVTEWHAMQQNLRDEMERRKDTEVALAQRDTILQNILEASPDSIGIFNENLV
CEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCHH
YQACNEPFVRALGIADVNDLIGKRLQDVVPGEMYQRLSVTDSQVLHEGKSLRYIDKVLDS
HHHCCCHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHCC
NGEYAWYDVVKSPFRDPASGTNGVLIMARDISERYLAEQKLEAANLELEKLSFMDSLTQV
CCCEEHHHHHHCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
SNRRRFDEQLNTLWFHHAREKLPLTIMLCDIDFFKEFNDRYGHQAGDEALIQVATVFSQV
HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
VSRSSDCVARYGGEEFALLLPNTTAEGALKVAEKIHAYIAESNIAHQGSKIAGRVTISIG
HHCCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHCCCCEEEEEEEEEE
LVSYIPSPEDVPDMGVALADSALYQAKSDGRNRTCVHPISLSSGESPSTLA
HHEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]