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The map label for this gene is ribD [H]

Identifier: 27363797

GI number: 27363797

Start: 311146

End: 312252

Strand: Reverse

Name: ribD [H]

Synonym: VV1_0323

Alternate gene names: 27363797

Gene position: 312252-311146 (Counterclockwise)

Preceding gene: 27363798

Following gene: 27363796

Centisome position: 9.51

GC content: 52.21

Gene sequence:

>1107_bases
ATGTCGGAATTTACTGCAATCGATAGACAAATGATGCTGCGCGCCATTGCTTTGGCGAAACGCGGCCTCTATACCACCGC
ACCTAATCCTAATGTTGGTTGTGTCTTACTGCGCGACGGCGAAATTGTCGGAGAAGGTTTTCACTTTCGCGCTGGCGAGC
CTCATGCGGAAGTGCACGCGATGCGCATGGCTGGTGACAAAGCCAAAGGTGCGACCGCTTATGTCACGCTAGAGCCTTGT
TCACACTATGGTCGAACGCCCCCGTGTGCGGAAGGCTTAATTAAAGCTGGGGTAAGCCGAGTGGTGTGTGCAATGGAAGA
CCCAAACCCCCAAGTCGCGGGGAGAGGTTTTGCCATGTTGCGAGAGGCAGGGATCGAGGTATCGGTGGGCCTACTTCAAG
CAGAAGCAGAAGCACTGAATCCTGCTTTTATTAAGCGAATGAAAATGGGCATGCCGTTTGTTCAACTCAAAATGGCCGCG
TCCCTCGATGGTCAAACGGCTTTAGCCAATGGCAAGAGTCAGTGGATCACCTCTCCACAAGCTCGCCGAGATGTGCAACG
TTTTCGGGCGCAATCAGGGGCGATTTTGTCCACCAGTAAAACGGTGCTCGCTGACAATGCGTCTCTTAATGTTCGTTGGT
CCGAGTTACCTTCATCTGTGCAACGCGCTTTACCGCAAGAGCAGCTGCGTCAGCCCACTCGTGTTGTGTTAGACAGACAA
GCCGAGCTTTCGCCGGAGCTAAAACTTTACCAAACCGAGGGTGAGCGACTCATTGTTGGTCCCAAAGGCGATCTCCCTGC
ACCTTTGGATGAGCACGGACAGATCGATTTGCCGCAACTGTTCGCGCAACTGAGTCAAACGCAGTTAATTAACCATCTTT
GGGTTGAAGCGGGAGCAACGCTGGCCGCTGGACTGATAAAACACCAGTTGGTGGACGAACTGATTGTTTACCTTGCCCCA
AAACTGATGGGCAGCGATGGACGTGGATTGATGGGTGCGCTGGGTTTGCAAGCCATGTCGCAAGTGATCGATTTAGACAT
TAAAGATGTGCGAATGGTTGGGCCGGATATCCGCATCATTGCACACATCAAAGCAAAAGAAAGTTGA

Upstream 100 bases:

>100_bases
TATATTCGCTTTGCTTCCGTATACCGTAGTTTTGAAGATATTCGTGAATTTGGTGAGGAAATCGCCAGATTGGAAGATTA
ACGCAAGGTAACGGTTCACC

Downstream 100 bases:

>100_bases
TATGTTCACAGGAATTATCGAAGCAGTTGGAACCTTGGCTGCGATTACCCCAAGAGGGGAAGACATTACCGTAACGGTTA
ACACAGGCAAGCTCGATATG

Product: riboflavin biosynthesis protein RibD

Products: NA

Alternate protein names: Diaminohydroxyphosphoribosylaminopyrimidine deaminase; DRAP deaminase; Riboflavin-specific deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase; HTP reductase [H]

Number of amino acids: Translated: 368; Mature: 367

Protein sequence:

>368_residues
MSEFTAIDRQMMLRAIALAKRGLYTTAPNPNVGCVLLRDGEIVGEGFHFRAGEPHAEVHAMRMAGDKAKGATAYVTLEPC
SHYGRTPPCAEGLIKAGVSRVVCAMEDPNPQVAGRGFAMLREAGIEVSVGLLQAEAEALNPAFIKRMKMGMPFVQLKMAA
SLDGQTALANGKSQWITSPQARRDVQRFRAQSGAILSTSKTVLADNASLNVRWSELPSSVQRALPQEQLRQPTRVVLDRQ
AELSPELKLYQTEGERLIVGPKGDLPAPLDEHGQIDLPQLFAQLSQTQLINHLWVEAGATLAAGLIKHQLVDELIVYLAP
KLMGSDGRGLMGALGLQAMSQVIDLDIKDVRMVGPDIRIIAHIKAKES

Sequences:

>Translated_368_residues
MSEFTAIDRQMMLRAIALAKRGLYTTAPNPNVGCVLLRDGEIVGEGFHFRAGEPHAEVHAMRMAGDKAKGATAYVTLEPC
SHYGRTPPCAEGLIKAGVSRVVCAMEDPNPQVAGRGFAMLREAGIEVSVGLLQAEAEALNPAFIKRMKMGMPFVQLKMAA
SLDGQTALANGKSQWITSPQARRDVQRFRAQSGAILSTSKTVLADNASLNVRWSELPSSVQRALPQEQLRQPTRVVLDRQ
AELSPELKLYQTEGERLIVGPKGDLPAPLDEHGQIDLPQLFAQLSQTQLINHLWVEAGATLAAGLIKHQLVDELIVYLAP
KLMGSDGRGLMGALGLQAMSQVIDLDIKDVRMVGPDIRIIAHIKAKES
>Mature_367_residues
SEFTAIDRQMMLRAIALAKRGLYTTAPNPNVGCVLLRDGEIVGEGFHFRAGEPHAEVHAMRMAGDKAKGATAYVTLEPCS
HYGRTPPCAEGLIKAGVSRVVCAMEDPNPQVAGRGFAMLREAGIEVSVGLLQAEAEALNPAFIKRMKMGMPFVQLKMAAS
LDGQTALANGKSQWITSPQARRDVQRFRAQSGAILSTSKTVLADNASLNVRWSELPSSVQRALPQEQLRQPTRVVLDRQA
ELSPELKLYQTEGERLIVGPKGDLPAPLDEHGQIDLPQLFAQLSQTQLINHLWVEAGATLAAGLIKHQLVDELIVYLAPK
LMGSDGRGLMGALGLQAMSQVIDLDIKDVRMVGPDIRIIAHIKAKES

Specific function: Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate [H]

COG id: COG1985

COG function: function code H; Pyrimidine reductase, riboflavin biosynthesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the HTP reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786616, Length=359, Percent_Identity=58.7743732590529, Blast_Score=422, Evalue=1e-119,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016192
- InterPro:   IPR002125
- InterPro:   IPR016193
- InterPro:   IPR004794
- InterPro:   IPR011549
- InterPro:   IPR002734 [H]

Pfam domain/function: PF00383 dCMP_cyt_deam_1; PF01872 RibD_C [H]

EC number: =3.5.4.26; =1.1.1.193 [H]

Molecular weight: Translated: 39891; Mature: 39760

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: PS00903 CYT_DCMP_DEAMINASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEFTAIDRQMMLRAIALAKRGLYTTAPNPNVGCVLLRDGEIVGEGFHFRAGEPHAEVHA
CCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCCEEEEECCEEECCCEEECCCCCHHHHHH
MRMAGDKAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVSRVVCAMEDPNPQVAGRGFAML
HHHCCCCCCCCEEEEEECCHHHCCCCCHHHHHHHHHCHHHEEEEECCCCCCCCCCHHHHH
REAGIEVSVGLLQAEAEALNPAFIKRMKMGMPFVQLKMAASLDGQTALANGKSQWITSPQ
HHCCCEEEEHHHHHHHHHCCHHHHHHHHHCCCCEEEEEHHCCCCCHHHCCCCHHCCCCHH
ARRDVQRFRAQSGAILSTSKTVLADNASLNVRWSELPSSVQRALPQEQLRQPTRVVLDRQ
HHHHHHHHHHHCCCEEECCCEEEECCCEEEEEHHHHHHHHHHCCCHHHHCCCHHHHHCCC
AELSPELKLYQTEGERLIVGPKGDLPAPLDEHGQIDLPQLFAQLSQTQLINHLWVEAGAT
CCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHH
LAAGLIKHQLVDELIVYLAPKLMGSDGRGLMGALGLQAMSQVIDLDIKDVRMVGPDIRII
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHEEECCCEEEE
AHIKAKES
EEEECCCC
>Mature Secondary Structure 
SEFTAIDRQMMLRAIALAKRGLYTTAPNPNVGCVLLRDGEIVGEGFHFRAGEPHAEVHA
CCHHHHHHHHHHHHHHHHHCCCEECCCCCCCCEEEEECCEEECCCEEECCCCCHHHHHH
MRMAGDKAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVSRVVCAMEDPNPQVAGRGFAML
HHHCCCCCCCCEEEEEECCHHHCCCCCHHHHHHHHHCHHHEEEEECCCCCCCCCCHHHHH
REAGIEVSVGLLQAEAEALNPAFIKRMKMGMPFVQLKMAASLDGQTALANGKSQWITSPQ
HHCCCEEEEHHHHHHHHHCCHHHHHHHHHCCCCEEEEEHHCCCCCHHHCCCCHHCCCCHH
ARRDVQRFRAQSGAILSTSKTVLADNASLNVRWSELPSSVQRALPQEQLRQPTRVVLDRQ
HHHHHHHHHHHCCCEEECCCEEEECCCEEEEEHHHHHHHHHHCCCHHHHCCCHHHHHCCC
AELSPELKLYQTEGERLIVGPKGDLPAPLDEHGQIDLPQLFAQLSQTQLINHLWVEAGAT
CCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHH
LAAGLIKHQLVDELIVYLAPKLMGSDGRGLMGALGLQAMSQVIDLDIKDVRMVGPDIRII
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHEEECCCEEEE
AHIKAKES
EEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1406588; 9278503; 9068650 [H]