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The map label for this gene is ygdD [C]

Identifier: 27363782

GI number: 27363782

Start: 296900

End: 297298

Strand: Reverse

Name: ygdD [C]

Synonym: VV1_0304

Alternate gene names: 27363782

Gene position: 297298-296900 (Counterclockwise)

Preceding gene: 326423686

Following gene: 229220647

Centisome position: 9.06

GC content: 47.37

Gene sequence:

>399_bases
ATGAAAAGTAAGTGGCTACTCACTTTTGTTGGTTTCTCAGGCGCATCGGCGGTCGCACTTGGCGCGTTTGCTGCTCACGG
ACTCAAAAGTCAATTGTCGCCATATTTGTTAGGTGTGTTTGAGACGGGCGTGATGTACCAGTTTTGGCATACCCTCGCCA
TCGCCCTGTGCGCCGTTCTGCTGTCTTTGCCGACTGGAGAGAAAGCGCAAAAATATTTTTTCCGCGCGGCAATTTGTTTT
ATCATCGGCATCTTTTGCTTTAGCTGCAGCTTATACGCCCTCGCATTAACTGGCATAAAATGGTTTGGCCCCATCACTCC
TATGGGAGGCTTGCTGTTTATTATTGGTTGGATAATGTTGATGTTGGCAGCTTTAAAAACGAACGAGGTATCTCAGTGA

Upstream 100 bases:

>100_bases
GATCATAGTTTTAAACCGAGAAAAAGTTCTGGCTATACAGAAGCCGGCAATGTGCAGTTGGCGATTGAGCAACTGTGCGC
TTTTATTAAAGGGGTTGACG

Downstream 100 bases:

>100_bases
AACAATTAATGCTCTATTGTCGTCAGGGCTTTGAAAAAGAGTGTGCTGGTGAAATTCAGGACAAAGCGACTCAGTTAGAG
GTTTATGGTTTTCCACGTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MKSKWLLTFVGFSGASAVALGAFAAHGLKSQLSPYLLGVFETGVMYQFWHTLAIALCAVLLSLPTGEKAQKYFFRAAICF
IIGIFCFSCSLYALALTGIKWFGPITPMGGLLFIIGWIMLMLAALKTNEVSQ

Sequences:

>Translated_132_residues
MKSKWLLTFVGFSGASAVALGAFAAHGLKSQLSPYLLGVFETGVMYQFWHTLAIALCAVLLSLPTGEKAQKYFFRAAICF
IIGIFCFSCSLYALALTGIKWFGPITPMGGLLFIIGWIMLMLAALKTNEVSQ
>Mature_132_residues
MKSKWLLTFVGFSGASAVALGAFAAHGLKSQLSPYLLGVFETGVMYQFWHTLAIALCAVLLSLPTGEKAQKYFFRAAICF
IIGIFCFSCSLYALALTGIKWFGPITPMGGLLFIIGWIMLMLAALKTNEVSQ

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Escherichia coli, GI1789172, Length=129, Percent_Identity=34.8837209302326, Blast_Score=76, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 14340; Mature: 14340

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKWLLTFVGFSGASAVALGAFAAHGLKSQLSPYLLGVFETGVMYQFWHTLAIALCAVL
CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSLPTGEKAQKYFFRAAICFIIGIFCFSCSLYALALTGIKWFGPITPMGGLLFIIGWIML
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
MLAALKTNEVSQ
HHHHHHHCCCCC
>Mature Secondary Structure
MKSKWLLTFVGFSGASAVALGAFAAHGLKSQLSPYLLGVFETGVMYQFWHTLAIALCAVL
CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSLPTGEKAQKYFFRAAICFIIGIFCFSCSLYALALTGIKWFGPITPMGGLLFIIGWIML
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
MLAALKTNEVSQ
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA