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The map label for this gene is flgF [H]

Identifier: 27363704

GI number: 27363704

Start: 215361

End: 216110

Strand: Reverse

Name: flgF [H]

Synonym: VV1_0222

Alternate gene names: 27363704

Gene position: 216110-215361 (Counterclockwise)

Preceding gene: 27363705

Following gene: 27363703

Centisome position: 6.58

GC content: 49.07

Gene sequence:

>750_bases
ATGGATCGTGCACTCTTTCTTGCTATGAGTGGTGCCAAGCAGAATATGCAGGCTCTGCAACTACGAGCGAACAACCTAGC
CAACGTGAGCACAACAGGGTTTCGTGCAGATTTAGCACAAGCTCGTTCAATGCAAGCGTACGGTGACGGGCTACCTACTC
GAGTTTTCAGCATGACAGAGCGCCCAGGACATAATTTTGCTCAAGGCAGTGTGATCACCACAGGCCGTGACCTCGATATT
ACGATTGAGGGAAATGGTTGGATTGGGGTGATGGATAAACTAGGCAAAGAAGGGTTAACCCGTAACGGTAATCTGAAAGT
CGATCAAAATGGACTACTGAGCAATGCCAGTGGACATTTGGTCCTTGGGGAAGGTGGTGCACCCATTACCATTCCTCTTC
CTGTGAGCAAAATTGAAATCGGTCGCGACGGCACGATTTCGGTCTTACCTCAAGGAGCGCCAGCGGAAGAGATGGAAGAA
ATCGATCGTATTAAGCTGGTCAAGACCAATGACAGTGCCTTGTTTAAAGACACCAATGGCCTGTTCCGCCACAAGGAACC
CAATCAGCCGTACGAAGCGGATCCAACGGTGCAAATCATGACAGGTGCCATTGAGGGCAGCAACGTGAATGCTGTTGGTG
AAATGACGGCTCTGATTGACCTGCAACGTCAATTTGAGATGCAGGTAAAAATGATGAGCACAGCAGAAGAGATGGACAAG
TCGTCTGATTCTCTGCTTCGTATGAGCTAA

Upstream 100 bases:

>100_bases
CTTTCGTAGTTATTCTTCTATGTGTTTGAATTCATTGAATAAAATAAATTGGCATGATGCTTGCTTTTAAGGTCTTAGAT
TAAGATTTTTGGAGCGGATT

Downstream 100 bases:

>100_bases
CAGAATTAGAGGTCACAGATTATGCATCCGGCACTATGGGTAAGTAAAACGGGCTTAGACGCTCAACAAACCAATATCGC
GACAATTTCAAACAACCTAG

Product: flagellar basal body rod protein FlgF

Products: NA

Alternate protein names: Putative proximal rod protein [H]

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MDRALFLAMSGAKQNMQALQLRANNLANVSTTGFRADLAQARSMQAYGDGLPTRVFSMTERPGHNFAQGSVITTGRDLDI
TIEGNGWIGVMDKLGKEGLTRNGNLKVDQNGLLSNASGHLVLGEGGAPITIPLPVSKIEIGRDGTISVLPQGAPAEEMEE
IDRIKLVKTNDSALFKDTNGLFRHKEPNQPYEADPTVQIMTGAIEGSNVNAVGEMTALIDLQRQFEMQVKMMSTAEEMDK
SSDSLLRMS

Sequences:

>Translated_249_residues
MDRALFLAMSGAKQNMQALQLRANNLANVSTTGFRADLAQARSMQAYGDGLPTRVFSMTERPGHNFAQGSVITTGRDLDI
TIEGNGWIGVMDKLGKEGLTRNGNLKVDQNGLLSNASGHLVLGEGGAPITIPLPVSKIEIGRDGTISVLPQGAPAEEMEE
IDRIKLVKTNDSALFKDTNGLFRHKEPNQPYEADPTVQIMTGAIEGSNVNAVGEMTALIDLQRQFEMQVKMMSTAEEMDK
SSDSLLRMS
>Mature_249_residues
MDRALFLAMSGAKQNMQALQLRANNLANVSTTGFRADLAQARSMQAYGDGLPTRVFSMTERPGHNFAQGSVITTGRDLDI
TIEGNGWIGVMDKLGKEGLTRNGNLKVDQNGLLSNASGHLVLGEGGAPITIPLPVSKIEIGRDGTISVLPQGAPAEEMEE
IDRIKLVKTNDSALFKDTNGLFRHKEPNQPYEADPTVQIMTGAIEGSNVNAVGEMTALIDLQRQFEMQVKMMSTAEEMDK
SSDSLLRMS

Specific function: Unknown

COG id: COG4787

COG function: function code N; Flagellar basal body rod protein

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flagella basal body rod proteins family [H]

Homologues:

Organism=Escherichia coli, GI1787317, Length=254, Percent_Identity=40.5511811023622, Blast_Score=181, Evalue=5e-47,
Organism=Escherichia coli, GI1787318, Length=261, Percent_Identity=32.183908045977, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010930
- InterPro:   IPR001444
- InterPro:   IPR019776
- InterPro:   IPR020013
- InterPro:   IPR012836 [H]

Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]

EC number: NA

Molecular weight: Translated: 26909; Mature: 26909

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRALFLAMSGAKQNMQALQLRANNLANVSTTGFRADLAQARSMQAYGDGLPTRVFSMTE
CCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHEEEECC
RPGHNFAQGSVITTGRDLDITIEGNGWIGVMDKLGKEGLTRNGNLKVDQNGLLSNASGHL
CCCCCCCCCCEEECCCCEEEEEECCCCEEHHHHCCCCCCCCCCCEEECCCCCEECCCCCE
VLGEGGAPITIPLPVSKIEIGRDGTISVLPQGAPAEEMEEIDRIKLVKTNDSALFKDTNG
EECCCCCCEEEECCCCEEEECCCCEEEEEECCCCHHHHHHCCEEEEEEECCCEEEECCCC
LFRHKEPNQPYEADPTVQIMTGAIEGSNVNAVGEMTALIDLQRQFEMQVKMMSTAEEMDK
CCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SSDSLLRMS
CCCCEEECC
>Mature Secondary Structure
MDRALFLAMSGAKQNMQALQLRANNLANVSTTGFRADLAQARSMQAYGDGLPTRVFSMTE
CCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHEEEECC
RPGHNFAQGSVITTGRDLDITIEGNGWIGVMDKLGKEGLTRNGNLKVDQNGLLSNASGHL
CCCCCCCCCCEEECCCCEEEEEECCCCEEHHHHCCCCCCCCCCCEEECCCCCEECCCCCE
VLGEGGAPITIPLPVSKIEIGRDGTISVLPQGAPAEEMEEIDRIKLVKTNDSALFKDTNG
EECCCCCCEEEECCCCEEEECCCCEEEEEECCCCHHHHHHCCEEEEEEECCCEEEECCCC
LFRHKEPNQPYEADPTVQIMTGAIEGSNVNAVGEMTALIDLQRQFEMQVKMMSTAEEMDK
CCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SSDSLLRMS
CCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]