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The map label for this gene is yoaA [H]

Identifier: 27363624

GI number: 27363624

Start: 125524

End: 127443

Strand: Reverse

Name: yoaA [H]

Synonym: VV1_0141

Alternate gene names: 27363624

Gene position: 127443-125524 (Counterclockwise)

Preceding gene: 27363625

Following gene: 27363623

Centisome position: 3.88

GC content: 49.22

Gene sequence:

>1920_bases
ATGATAGCAAAAACGTTTTCTTCCAAAGGTGCTTTAGGCAAGGCCATTCCCGGCTTTCAAGCTCGTCAACCTCAGGTCGA
TATGGCCGAAGCGGTCGCCGAGGCGATCCAACAGCAAACACAGCTTGTGGTTGAAGCGGGGACCGGAACCGGTAAAACCT
TCGCTTATCTGGTGCCAGCTCTGCTAAGTGGCAAAAAGGTCATTATTTCTACCGGTTCGAAAAACTTGCAAGAACAGCTT
TTTCATCGTGATTTGCCGCTCATGACCGATGCGTTAGGCTTTTTTGGACAACTCGCGTTGTTGAAAGGCCGCTCCAACTA
TTTGTGTTTAGAGCGTTTAAGCCGACAAATGGTCGAAGTGCATCACAATGAATCGGATTCCACGTCATTAAGCCAATTGG
TCAAAGTGCGCAGTTGGTCTTCGGAAACCAAAACGGGCGATTTGGGTGATTGTGAAGAGTTGCCAGAAGACAGCATGATC
ATACCCACCATCACGTCAACCAATGACAACTGCTTAGGCAAAGATTGTCCAAGTTACCAAGATTGCTTTGTGTTAAAAGC
GCGAAAGAAAGCGCTGGATGCCGATGTGGTGGTGGTGAACCATCACCTTTTTCTTGCCGACCTGGCGATCAAAGAAACCG
GTTTTGGTGAGCTGATCCCCGAAGCGGATGTGTTTATTTTTGATGAGGCGCATCAACTACCTGATATTGCGAGCGAATAT
TTTGGTCAGTCACTCTCCAGCCGCCAGATTCTCGATTTGGCCAAAGACATTGAAATTGCCTATCGCACGGAAGTGAAAGA
CATGCGTCAGCTGCAAAAAGTGGGGGATAAATTAGCCCAAACCGCAATGGATATGCGCATTGTGCTGGGTGAGCCTGGCT
TTCGTGGCAATTGGCGAGATGCCTTACAATCGCCATCCATCAAGCGCGAAGTGGATCGCTTGGTGGATGCGTTGGATCTG
ACCATCGAGGTACTCAAGCTCGCGTTAGGTCGCTGCCAATTGCTTGATGTGGCGTTTGAGCGCGCTAACCTCATTAAAGG
TCGTTTAGAACGAGTGTGTGATACCAGCATCACGGGCTATTCGTACTGGTTTGATACCTCGCCGCGCCATTTTACATTGC
ACATCACGCCGCTCTCAGTTGCGGACAAATTTCATGAGCAAATAGAGATCAAACAGGGCGCGTGGATCTTCACCTCGGCC
ACGTTGGCGGTGGGGGACGATTTTAGTCATTTTACCGACCGCTTAGGCTTAAAGCCGCGAAAGCAATTCTCATTGCCAAG
CCCATTTGATTATGCCGAGCAGGCGCGATTGTGCGTCCCTCGCTATCTACCAGAGCCCAATAGCCCAGGTTTGGCGCAAA
AGCTGGTGGCGATGTTGGCGCCGGTGATTGAATCCAACCAAGGGCGTTGTTTCTTCCTCTGTACTTCACATTCGATGATG
CGTGAATTAGGCGAGCGTTTTCGCGAGGTTTTGGACTTACCCGTTTTATTGCAAGGCGAGATGAGCAAACAGCGCACGCT
CGCTGAATTTATGGAGTTGGGGAATGCCTTGCTGGTGGCCACTGGCGCTTTTTGGGAAGGAATCGATGTTAGAGGTGACG
CCTTAAGCTGTGTTATCATCGACAAACTTCCTTTTACATCACCAGATGACCCGCTACTTAAAGCTCGTATCGAAGATTGT
CGATTACGAGGCGGAGAGCCGTTTGAGCAAGTACAACTGCCTGATGCAGTCATTACGCTCAAACAAGGGGTAGGGCGTCT
GATTCGAGATCAAAAAGATCGCGGGGCTTTAATCATCTGTGACAACCGCTTGGTCACAAGAGAATACGGCGGCATTTTTC
TTGCCAGCTTACCTCCGATCCCAAGAACCCGTGATTTGGATTTGATTCAACAATTTCTAACAGAACAAACAGAGAACTGA

Upstream 100 bases:

>100_bases
TAACCGACCAAATACCTGCCGAGGCGAAGACAATTCGGATTCGCCTCAAAAAGACAAACCTGACATAATCTGTGCCACTG
ACCCCTCAGCAGAACACAGA

Downstream 100 bases:

>100_bases
ATGAGCGCTAAAATTCTTGCTATCGACACCGCAACCGAAAACTGTTCAGTCGCCCTTTTAGTCGGCGACCAAGTCTTTTC
ACGTAGCGAAGTGGCCCCAC

Product: DinG family ATP-dependent helicase YoaA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 639; Mature: 639

Protein sequence:

>639_residues
MIAKTFSSKGALGKAIPGFQARQPQVDMAEAVAEAIQQQTQLVVEAGTGTGKTFAYLVPALLSGKKVIISTGSKNLQEQL
FHRDLPLMTDALGFFGQLALLKGRSNYLCLERLSRQMVEVHHNESDSTSLSQLVKVRSWSSETKTGDLGDCEELPEDSMI
IPTITSTNDNCLGKDCPSYQDCFVLKARKKALDADVVVVNHHLFLADLAIKETGFGELIPEADVFIFDEAHQLPDIASEY
FGQSLSSRQILDLAKDIEIAYRTEVKDMRQLQKVGDKLAQTAMDMRIVLGEPGFRGNWRDALQSPSIKREVDRLVDALDL
TIEVLKLALGRCQLLDVAFERANLIKGRLERVCDTSITGYSYWFDTSPRHFTLHITPLSVADKFHEQIEIKQGAWIFTSA
TLAVGDDFSHFTDRLGLKPRKQFSLPSPFDYAEQARLCVPRYLPEPNSPGLAQKLVAMLAPVIESNQGRCFFLCTSHSMM
RELGERFREVLDLPVLLQGEMSKQRTLAEFMELGNALLVATGAFWEGIDVRGDALSCVIIDKLPFTSPDDPLLKARIEDC
RLRGGEPFEQVQLPDAVITLKQGVGRLIRDQKDRGALIICDNRLVTREYGGIFLASLPPIPRTRDLDLIQQFLTEQTEN

Sequences:

>Translated_639_residues
MIAKTFSSKGALGKAIPGFQARQPQVDMAEAVAEAIQQQTQLVVEAGTGTGKTFAYLVPALLSGKKVIISTGSKNLQEQL
FHRDLPLMTDALGFFGQLALLKGRSNYLCLERLSRQMVEVHHNESDSTSLSQLVKVRSWSSETKTGDLGDCEELPEDSMI
IPTITSTNDNCLGKDCPSYQDCFVLKARKKALDADVVVVNHHLFLADLAIKETGFGELIPEADVFIFDEAHQLPDIASEY
FGQSLSSRQILDLAKDIEIAYRTEVKDMRQLQKVGDKLAQTAMDMRIVLGEPGFRGNWRDALQSPSIKREVDRLVDALDL
TIEVLKLALGRCQLLDVAFERANLIKGRLERVCDTSITGYSYWFDTSPRHFTLHITPLSVADKFHEQIEIKQGAWIFTSA
TLAVGDDFSHFTDRLGLKPRKQFSLPSPFDYAEQARLCVPRYLPEPNSPGLAQKLVAMLAPVIESNQGRCFFLCTSHSMM
RELGERFREVLDLPVLLQGEMSKQRTLAEFMELGNALLVATGAFWEGIDVRGDALSCVIIDKLPFTSPDDPLLKARIEDC
RLRGGEPFEQVQLPDAVITLKQGVGRLIRDQKDRGALIICDNRLVTREYGGIFLASLPPIPRTRDLDLIQQFLTEQTEN
>Mature_639_residues
MIAKTFSSKGALGKAIPGFQARQPQVDMAEAVAEAIQQQTQLVVEAGTGTGKTFAYLVPALLSGKKVIISTGSKNLQEQL
FHRDLPLMTDALGFFGQLALLKGRSNYLCLERLSRQMVEVHHNESDSTSLSQLVKVRSWSSETKTGDLGDCEELPEDSMI
IPTITSTNDNCLGKDCPSYQDCFVLKARKKALDADVVVVNHHLFLADLAIKETGFGELIPEADVFIFDEAHQLPDIASEY
FGQSLSSRQILDLAKDIEIAYRTEVKDMRQLQKVGDKLAQTAMDMRIVLGEPGFRGNWRDALQSPSIKREVDRLVDALDL
TIEVLKLALGRCQLLDVAFERANLIKGRLERVCDTSITGYSYWFDTSPRHFTLHITPLSVADKFHEQIEIKQGAWIFTSA
TLAVGDDFSHFTDRLGLKPRKQFSLPSPFDYAEQARLCVPRYLPEPNSPGLAQKLVAMLAPVIESNQGRCFFLCTSHSMM
RELGERFREVLDLPVLLQGEMSKQRTLAEFMELGNALLVATGAFWEGIDVRGDALSCVIIDKLPFTSPDDPLLKARIEDC
RLRGGEPFEQVQLPDAVITLKQGVGRLIRDQKDRGALIICDNRLVTREYGGIFLASLPPIPRTRDLDLIQQFLTEQTEN

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase ATP-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788110, Length=628, Percent_Identity=65.6050955414013, Blast_Score=851, Evalue=0.0,
Organism=Escherichia coli, GI1787018, Length=291, Percent_Identity=31.2714776632302, Blast_Score=109, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR010614
- InterPro:   IPR014013
- InterPro:   IPR006555
- InterPro:   IPR006935 [H]

Pfam domain/function: PF06733 DEAD_2; PF04851 ResIII [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 71294; Mature: 71294

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAKTFSSKGALGKAIPGFQARQPQVDMAEAVAEAIQQQTQLVVEAGTGTGKTFAYLVPA
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHH
LLSGKKVIISTGSKNLQEQLFHRDLPLMTDALGFFGQLALLKGRSNYLCLERLSRQMVEV
HHCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
HHNESDSTSLSQLVKVRSWSSETKTGDLGDCEELPEDSMIIPTITSTNDNCLGKDCPSYQ
HCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCCCCCCCCCCCHH
DCFVLKARKKALDADVVVVNHHLFLADLAIKETGFGELIPEADVFIFDEAHQLPDIASEY
HHHHHHHHHHCCCCCEEEEECEEEEHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHH
FGQSLSSRQILDLAKDIEIAYRTEVKDMRQLQKVGDKLAQTAMDMRIVLGEPGFRGNWRD
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCHHH
ALQSPSIKREVDRLVDALDLTIEVLKLALGRCQLLDVAFERANLIKGRLERVCDTSITGY
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
SYWFDTSPRHFTLHITPLSVADKFHEQIEIKQGAWIFTSATLAVGDDFSHFTDRLGLKPR
EEEECCCCCEEEEEEECHHHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHCCCCCC
KQFSLPSPFDYAEQARLCVPRYLPEPNSPGLAQKLVAMLAPVIESNQGRCFFLCTSHSMM
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
RELGERFREVLDLPVLLQGEMSKQRTLAEFMELGNALLVATGAFWEGIDVRGDALSCVII
HHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEE
DKLPFTSPDDPLLKARIEDCRLRGGEPFEQVQLPDAVITLKQGVGRLIRDQKDRGALIIC
ECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
DNRLVTREYGGIFLASLPPIPRTRDLDLIQQFLTEQTEN
CCEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MIAKTFSSKGALGKAIPGFQARQPQVDMAEAVAEAIQQQTQLVVEAGTGTGKTFAYLVPA
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHH
LLSGKKVIISTGSKNLQEQLFHRDLPLMTDALGFFGQLALLKGRSNYLCLERLSRQMVEV
HHCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
HHNESDSTSLSQLVKVRSWSSETKTGDLGDCEELPEDSMIIPTITSTNDNCLGKDCPSYQ
HCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCCCCCCCCCCCHH
DCFVLKARKKALDADVVVVNHHLFLADLAIKETGFGELIPEADVFIFDEAHQLPDIASEY
HHHHHHHHHHCCCCCEEEEECEEEEHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHH
FGQSLSSRQILDLAKDIEIAYRTEVKDMRQLQKVGDKLAQTAMDMRIVLGEPGFRGNWRD
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCHHH
ALQSPSIKREVDRLVDALDLTIEVLKLALGRCQLLDVAFERANLIKGRLERVCDTSITGY
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
SYWFDTSPRHFTLHITPLSVADKFHEQIEIKQGAWIFTSATLAVGDDFSHFTDRLGLKPR
EEEECCCCCEEEEEEECHHHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHCCCCCC
KQFSLPSPFDYAEQARLCVPRYLPEPNSPGLAQKLVAMLAPVIESNQGRCFFLCTSHSMM
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
RELGERFREVLDLPVLLQGEMSKQRTLAEFMELGNALLVATGAFWEGIDVRGDALSCVII
HHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEE
DKLPFTSPDDPLLKARIEDCRLRGGEPFEQVQLPDAVITLKQGVGRLIRDQKDRGALIIC
ECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
DNRLVTREYGGIFLASLPPIPRTRDLDLIQQFLTEQTEN
CCEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]