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The map label for this gene is xerC [H]

Identifier: 27363605

GI number: 27363605

Start: 108409

End: 109455

Strand: Reverse

Name: xerC [H]

Synonym: VV1_0122

Alternate gene names: 27363605

Gene position: 109455-108409 (Counterclockwise)

Preceding gene: 27363608

Following gene: 27363603

Centisome position: 3.34

GC content: 48.23

Gene sequence:

>1047_bases
ATGGATTTTTCTGCCCCCGACCAAGAAATAAAAACAAACCAAGCTTCAACTGATCCAATTGATCAGTTTCTTACCTGGAA
GAGAGATAGTGAGAACTGCAGCGCTAAAACGGTGCGCAAATATCGTGGCTTGCTTGAGCAGCTAAAGAAGTTTGTTGATG
GCCAATTTGACAAGGTTGAACTGAAAGATTTGGAGCAGTTTTCCGGTGGTTGGCTGCATCGAGCTGGCTATTCTGCTGCG
TCACGAAAGGTGGCCGTTGCGGCTATTCGAGGCTTTTACTCTTTTCTTGCTAAGCGGCGCCTTGTCGCTAAAAACCCTGC
ATCGGATTTGGTTTACCCTAAAATTGGGCGCAGATTACCGCGATTTATGGGGCTCAAAAGTGCAGAGGCGTTGTTGTTCC
AACCTGAGTTAACATCGCTTTCTGGTGTTCGAGATAGTGCGATGCTGTCTTTGCTGATTGGCTGCGGTTTTCGTGTAGCG
GGCCTATGCGGTTTGAATGAGTCACAGCTTATTTGGTATCAGTATGGTGAGGTTGAACGTCTGGCCATTCGCACCATGGA
AAAAGGGGAGCGTGAGAGATTGGTACCCGTTCCCCTTGAAGCTATGCTGCTTGTTCAGGCTTATCTTGGCCATCCCGACC
TTAAGCATGTTGATCGTCTGCTTGATGATGGTGACCAGGTACTGTTTGTTAATCTTCGTAACCGTCACGTTCCGGAATGG
GAGCACCGTGGAGAACTGCGGCGCTTATCAACTAGAGCTGTTGACCGGATGATAAAGAAATATGCGATCGCCGCGGGAGT
TCCGGAAGACCAAGCCCATGCTCATGCACTACGTCACTTGTTTGGTACAGAGTTAGCGGAGTCGGATTCCAGCACTCTGC
AGATTCAAGCATTGATGGGGCATGCGGACCCTAAAACGTCAGAGATTTACACGCATATCTCGATGCGTAAGATGACGAAC
GTACTGGATAAAGGGAACCCATTAGGGAAAATTGATACGCCAGTTAGTGCCTTGTTGAATGAGCTTAGAAAAGGGAAACG
CCTATGA

Upstream 100 bases:

>100_bases
CCCATAGGTTTTTCCATGGGTTTTTAAAGCCCCTCCAAATGACCGGAAGCCTTATGAATACTGGCTTTAGTGAGTTCTCA
CCCTACGAGATCAGAGGTCC

Downstream 100 bases:

>100_bases
AATTAAGACCACTGCATGATTGGGTAGTAATTCAGCGAGATGAACGCCCCAGAAGCTTGTTGTGGACGCCAGATAAGCCA
GCTAACACTGGTGAGGTAGT

Product: site-specific recombinase XerD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MDFSAPDQEIKTNQASTDPIDQFLTWKRDSENCSAKTVRKYRGLLEQLKKFVDGQFDKVELKDLEQFSGGWLHRAGYSAA
SRKVAVAAIRGFYSFLAKRRLVAKNPASDLVYPKIGRRLPRFMGLKSAEALLFQPELTSLSGVRDSAMLSLLIGCGFRVA
GLCGLNESQLIWYQYGEVERLAIRTMEKGERERLVPVPLEAMLLVQAYLGHPDLKHVDRLLDDGDQVLFVNLRNRHVPEW
EHRGELRRLSTRAVDRMIKKYAIAAGVPEDQAHAHALRHLFGTELAESDSSTLQIQALMGHADPKTSEIYTHISMRKMTN
VLDKGNPLGKIDTPVSALLNELRKGKRL

Sequences:

>Translated_348_residues
MDFSAPDQEIKTNQASTDPIDQFLTWKRDSENCSAKTVRKYRGLLEQLKKFVDGQFDKVELKDLEQFSGGWLHRAGYSAA
SRKVAVAAIRGFYSFLAKRRLVAKNPASDLVYPKIGRRLPRFMGLKSAEALLFQPELTSLSGVRDSAMLSLLIGCGFRVA
GLCGLNESQLIWYQYGEVERLAIRTMEKGERERLVPVPLEAMLLVQAYLGHPDLKHVDRLLDDGDQVLFVNLRNRHVPEW
EHRGELRRLSTRAVDRMIKKYAIAAGVPEDQAHAHALRHLFGTELAESDSSTLQIQALMGHADPKTSEIYTHISMRKMTN
VLDKGNPLGKIDTPVSALLNELRKGKRL
>Mature_348_residues
MDFSAPDQEIKTNQASTDPIDQFLTWKRDSENCSAKTVRKYRGLLEQLKKFVDGQFDKVELKDLEQFSGGWLHRAGYSAA
SRKVAVAAIRGFYSFLAKRRLVAKNPASDLVYPKIGRRLPRFMGLKSAEALLFQPELTSLSGVRDSAMLSLLIGCGFRVA
GLCGLNESQLIWYQYGEVERLAIRTMEKGERERLVPVPLEAMLLVQAYLGHPDLKHVDRLLDDGDQVLFVNLRNRHVPEW
EHRGELRRLSTRAVDRMIKKYAIAAGVPEDQAHAHALRHLFGTELAESDSSTLQIQALMGHADPKTSEIYTHISMRKMTN
VLDKGNPLGKIDTPVSALLNELRKGKRL

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=316, Percent_Identity=27.2151898734177, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1790244, Length=257, Percent_Identity=29.1828793774319, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 39265; Mature: 39265

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFSAPDQEIKTNQASTDPIDQFLTWKRDSENCSAKTVRKYRGLLEQLKKFVDGQFDKVE
CCCCCCCHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH
LKDLEQFSGGWLHRAGYSAASRKVAVAAIRGFYSFLAKRRLVAKNPASDLVYPKIGRRLP
HHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
RFMGLKSAEALLFQPELTSLSGVRDSAMLSLLIGCGFRVAGLCGLNESQLIWYQYGEVER
HHHCCCCCCCEEECCCHHHHHCCHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCHHH
LAIRTMEKGERERLVPVPLEAMLLVQAYLGHPDLKHVDRLLDDGDQVLFVNLRNRHVPEW
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEEECCCCCCCH
EHRGELRRLSTRAVDRMIKKYAIAAGVPEDQAHAHALRHLFGTELAESDSSTLQIQALMG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
HADPKTSEIYTHISMRKMTNVLDKGNPLGKIDTPVSALLNELRKGKRL
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MDFSAPDQEIKTNQASTDPIDQFLTWKRDSENCSAKTVRKYRGLLEQLKKFVDGQFDKVE
CCCCCCCHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH
LKDLEQFSGGWLHRAGYSAASRKVAVAAIRGFYSFLAKRRLVAKNPASDLVYPKIGRRLP
HHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
RFMGLKSAEALLFQPELTSLSGVRDSAMLSLLIGCGFRVAGLCGLNESQLIWYQYGEVER
HHHCCCCCCCEEECCCHHHHHCCHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCHHH
LAIRTMEKGERERLVPVPLEAMLLVQAYLGHPDLKHVDRLLDDGDQVLFVNLRNRHVPEW
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEEECCCCCCCH
EHRGELRRLSTRAVDRMIKKYAIAAGVPEDQAHAHALRHLFGTELAESDSSTLQIQALMG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
HADPKTSEIYTHISMRKMTNVLDKGNPLGKIDTPVSALLNELRKGKRL
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA