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The map label for this gene is rraA

Identifier: 161501827

GI number: 161501827

Start: 1332278

End: 1332799

Strand: Reverse

Name: rraA

Synonym: VV1_1352

Alternate gene names: 161501827

Gene position: 1332799-1332278 (Counterclockwise)

Preceding gene: 27364750

Following gene: 27364748

Centisome position: 40.61

GC content: 50.0

Gene sequence:

>522_bases
ATGGAATACAACACTTCAGCCCTTTGCGATATCTATATGGACCAAGTGGATGTAGTCGAGCCTATGTTCAGTAACTTTGG
TGGCCGCGCTTCCTTTGCCGGACAAATCACCACAGTCAAGTGTTTTGAGGACAATGCCCTCATTCGAGAAACGCTGGAAC
AAGATGGTGTTGGCCGTGTACTTTTGGTTGATGGTGGTGGTTCATTGCGCCGAGCATTACTTGACGGCGAACTTGCCGCG
ATAGCGGAAGAGAACGAATGGGAAGGCATCGTTGTCTACGGCTGTGTGCGTGAAGTGGACGAGCTGGAAGATATGAATAT
CGGCATTCAAGCTTTAGCCTCTATTCCAGTGGGTGCTGCCATGCAGGGTGTTGGCGAAGTGGATGTTCCCGTCAATTTTG
GTGGGGTGACCTTCCTTCCAGAAGACTACCTCTATGCAGATACAACGGGCATCATTCTCTCCCAAGAGCCTCTCAGTGCC
GATCTTGAAGAAGATGAAGAAGAGCCAGAGCTGCTCGATTAA

Upstream 100 bases:

>100_bases
GGTAGCTCAAACTCTTGTTAGTTAATCATTAATTGTCATTGCAATGACTTAATGCACGGATATACTCAAAAGAAATCTCG
TTGACCAAAGAAGGTATGCC

Downstream 100 bases:

>100_bases
AGAGAAAAAAGCGTCACTTTGACGCTTTTTTCTATTGAGCAAGCAGTCAAAACAGAGCAAAAGTCAGCGCGGCGTAAAGA
TGCGCTGTTTTTTTGACCGA

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MEYNTSALCDIYMDQVDVVEPMFSNFGGRASFAGQITTVKCFEDNALIRETLEQDGVGRVLLVDGGGSLRRALLDGELAA
IAEENEWEGIVVYGCVREVDELEDMNIGIQALASIPVGAAMQGVGEVDVPVNFGGVTFLPEDYLYADTTGIILSQEPLSA
DLEEDEEEPELLD

Sequences:

>Translated_173_residues
MEYNTSALCDIYMDQVDVVEPMFSNFGGRASFAGQITTVKCFEDNALIRETLEQDGVGRVLLVDGGGSLRRALLDGELAA
IAEENEWEGIVVYGCVREVDELEDMNIGIQALASIPVGAAMQGVGEVDVPVNFGGVTFLPEDYLYADTTGIILSQEPLSA
DLEEDEEEPELLD
>Mature_173_residues
MEYNTSALCDIYMDQVDVVEPMFSNFGGRASFAGQITTVKCFEDNALIRETLEQDGVGRVLLVDGGGSLRRALLDGELAA
IAEENEWEGIVVYGCVREVDELEDMNIGIQALASIPVGAAMQGVGEVDVPVNFGGVTFLPEDYLYADTTGIILSQEPLSA
DLEEDEEEPELLD

Specific function: Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. Modulates RNA-binding and helicase activities

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family

Homologues:

Organism=Escherichia coli, GI1790364, Length=158, Percent_Identity=70.253164556962, Blast_Score=235, Evalue=1e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRAA_VIBVU (Q8DCP6)

Other databases:

- EMBL:   AE016795
- RefSeq:   NP_760277.2
- ProteinModelPortal:   Q8DCP6
- SMR:   Q8DCP6
- GeneID:   1178276
- GenomeReviews:   AE016795_GR
- KEGG:   vvu:VV1_1352
- HOGENOM:   HBG668175
- OMA:   QNEWEGI
- ProtClustDB:   PRK09372
- BioCyc:   VVUL216895:VV1_1352-MONOMER
- HAMAP:   MF_00471
- InterPro:   IPR005493
- InterPro:   IPR014339
- InterPro:   IPR010203
- Gene3D:   G3DSA:3.50.30.40
- TIGRFAMs:   TIGR01935
- TIGRFAMs:   TIGR02998

Pfam domain/function: PF03737 Methyltransf_6; SSF89562 RNaseE_inh/diMeMenaQ_MeTrfase

EC number: NA

Molecular weight: Translated: 18730; Mature: 18730

Theoretical pI: Translated: 3.42; Mature: 3.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYNTSALCDIYMDQVDVVEPMFSNFGGRASFAGQITTVKCFEDNALIRETLEQDGVGRV
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCHHHHHHHHHCCCCEE
LLVDGGGSLRRALLDGELAAIAEENEWEGIVVYGCVREVDELEDMNIGIQALASIPVGAA
EEEECCCHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHCCCCCHHHHHCCCCCHH
MQGVGEVDVPVNFGGVTFLPEDYLYADTTGIILSQEPLSADLEEDEEEPELLD
HCCCCCCCCEEECCCEEECCCCCEEECCCEEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MEYNTSALCDIYMDQVDVVEPMFSNFGGRASFAGQITTVKCFEDNALIRETLEQDGVGRV
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCHHHHHHHHHCCCCEE
LLVDGGGSLRRALLDGELAAIAEENEWEGIVVYGCVREVDELEDMNIGIQALASIPVGAA
EEEECCCHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHCCCCCHHHHHCCCCCHH
MQGVGEVDVPVNFGGVTFLPEDYLYADTTGIILSQEPLSADLEEDEEEPELLD
HCCCCCCCCEEECCCEEECCCCCEEECCCEEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA