| Definition | Shewanella oneidensis MR-1, complete genome. |
|---|---|
| Accession | NC_004347 |
| Length | 4,969,803 |
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The map label for this gene is ribD
Identifier: 24374975
GI number:
Start: 3614172
End: 3615317
Strand: Reverse
Name: ribD
Synonym: SO_3469
Alternate gene names: NA
Gene position: NA
Preceding gene: 24374976
Following gene: 24374974
Centisome position: NA
GC content: NA
Gene sequence:
>1146_bases ATGAATTGGTCAGTACTCGATAACCAAATGATGAGCCGAGCTATTCAATTGGCTCGCAAAGGATTTTATACCACTCGCCC CAATCCCAGTGTGGGCTGCGTTATCGTTAACGATAACCAGATTGTCGGTGAAGGTTATCATCAAAAAGCCGGAGAGCCCC ACGCTGAAGTGCATGCGCTGCGCATGGCTGGCGAGCTTGCCCGTGGCGCGACTGCTTATGTCACCTTAGAACCCTGCAGC CATTATGGTCGTACGCCGCCCTGCGCCTTGGCGCTGATCAATATTGGTGTAAAGCGGGTGGTGGTGGCGGTTGAAGATCC TAATCCGCAGGTCGGCGGGCGCGGTATTCAAATGCTGCGCGATGCGGGTATTCAAGTGGATGTGGGCTTGCATCGTGATG AGGCCTATGCCTTAAATCTTGGTTTTATGAAGCGCATGGAGTCGGGTCTACCTTGGGTGACGGTAAAGCTTGCCGCGAGT CTTGATGGTAAAACTGCGTTATCAAACGGGGTGTCTAAATGGATCACTGGCCCTGAAGCTCGCCGCGATGTGCAGCGCTT AAGATTACGATCCTGCGCGCTGATCACGGGGATTGAAACGGTACTGGCCGATGATCCATCGCTCAATGTGCGCTACTCAG AGCTTGGCAGTTTAAGAGCGCAATTGAGTGAGTCGCAGGTTTTACAGCCGCTGCGAGTGGTTTTGGACAGTCGCGCCCGC ATGCCTATCACGGCAGCATTGTTTGCGATTGAATCACCCATTTTATTAGTCTCGACAGTGAGCTATTCGTCAGACTTTAT GGTGCAATTACCCGCCCATGTGACTTGCCTCCAATTACCAGCCATTGAGGGTCGAATCTCCTTGTCTGCACTATTAAGCT ATTTAGGCAAAAGCTGTAATCAGGTGCTTATCGAAGCGGGCGCGACTTTAGCTGGCGCCTTTATCGGCTCAGGATTAGCC GATGAATTAGTGCTTTATCAAGCGATGAAAATCCTTGGCGGCCAAGGACGTAATCTACTTGAATTACCCGATTATCAAAT GATGGCCGATATTCCGACCCTCAAATTGGTCGACGAGCGTAAAGTGGGCGCGGATACGCGCTTCACCTTGAGGCTCGAGT CCAATCCATCTTTAGCGAATAAGTGA
Upstream 100 bases:
>100_bases GAGGCGATTGCTAAGCTGCAAAAATAGTTTTTGATAGCATCTGGTTAAAGTGTGTAGCAATGCGCTAAAAGCGGATGACT CAAAATATCATAGGGTTTAT
Downstream 100 bases:
>100_bases GTTAACCATGTTTACTGGGATTATTGAGGCCGTTGGTACACTGCGAAAGCTTGAGCGTAAAGGCGATGATATTCGCTTAA CGGTCGCCAGTGGCAAACTG
Product: riboflavin biosynthesis protein RibD
Products: NA
Alternate protein names: NA
Number of amino acids: NA
Protein sequence:
>381_residues MNWSVLDNQMMSRAIQLARKGFYTTRPNPSVGCVIVNDNQIVGEGYHQKAGEPHAEVHALRMAGELARGATAYVTLEPCS HYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLRDAGIQVDVGLHRDEAYALNLGFMKRMESGLPWVTVKLAAS LDGKTALSNGVSKWITGPEARRDVQRLRLRSCALITGIETVLADDPSLNVRYSELGSLRAQLSESQVLQPLRVVLDSRAR MPITAALFAIESPILLVSTVSYSSDFMVQLPAHVTCLQLPAIEGRISLSALLSYLGKSCNQVLIEAGATLAGAFIGSGLA DELVLYQAMKILGGQGRNLLELPDYQMMADIPTLKLVDERKVGADTRFTLRLESNPSLANK
Sequences:
NA
Specific function: NA
COG id: COG0117
COG function: function code H; Pyrimidine deaminase
Gene ontology:
Cell location: NA
Metaboloic importance: NA
Operon status: NA
Operon components: NA
Similarity: NA
Homologues:
NA
Paralogues:
NA
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: NA
Theoretical pI: NA
Prosite motif: NA
Important sites: NA
Signals:
NA
Transmembrane regions:
NA
Cys/Met content:
NA
Secondary structure: NA
PDB accession: NA
Resolution: NA
Structure class: NA
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: NA
TargetDB status: NA
Availability: NA
References: NA