Definition Shewanella oneidensis MR-1, complete genome.
Accession NC_004347
Length 4,969,803

Click here to switch to the map view.

The map label for this gene is dnaE

Identifier: 24373212

GI number:

Start: 1726307

End: 1729783

Strand: Direct

Name: dnaE

Synonym: SO_1644

Alternate gene names: NA

Gene position: NA

Preceding gene: 24373211

Following gene: 24373213

Centisome position: NA

GC content: NA

Gene sequence:

>3477_bases
ATGTCCGATCCTCGTTTTGTGCATCTGCGTGTCCACAGTGACTTTTCCATGTCTGATGGTGTGGCTAAGGTCAAGCCGAT
CCTCGCTCAAGTTGAAGCGAAAGGAATGGCGGCGGTGGCTTTGACGGATCAAAACAACCTCTGTGGTTTAGTCAAGTTTT
ACGGCGGTTGCCACGGTGCGGGGATCAAGCCGATTATTGGCGCGGACTTTTGGATGCAAGTGCCAGGCTTTGAGGATGAA
TTTTGTGCTGTCACCATTATCGCAATGGATAATGAAGGCTATCAAAATCTCACTCAAATCATCAGCCAAGCCTATTTACG
TGGTCAAGTTCAAGGGCGTGTAGTGATTGACCAAGAGTGGTTGATCACTTACAACCCTGGCATTTTGCTACTGTCTGGCG
GCAAAGAAGGGGACATAGGTAAAGCGCTGCTAAAAGGCAACAATACCCAAGTCGAGTCGTTATGCGAGTTTTATCAGCAG
CATTTTGAGGGGCGTTATTTCCTCGAATTATTGCGTACAGGGCGCCCCGATGAGGAACGTTACCTGCATATGGCGGTGGG
AGTAGCGCAGGAAAAGGGCATTCCGGTGGTAGCCACCAATCAGGTGGTGTTTTTAAAGCCTGAGGACTTTGAGGCACATG
AAATCCGGGTCGCGATTCATGATGGTTTTACGCTTGCCGATCCGCGCCGTCCTAAAAAGTACAGTGAGCAGCAGTACCTT
CGCAGTGAAGATGAAATGTGCGAACTGTTTGCCGATATTCCCGCAGCCCTTGCCAATACGGTTGAAATTGCTAAACGCTG
TAACGTCACCATCCGTTTAAACGAATACTTTTTACCCAATTTTCCTACCGGCGACATGTCAATTGAAGATTTTCTGGTTG
ATTGCTCGAAAAAAGGGCTTGAAGAACGTTTAGCATTTTTATTCCCCGATCCACAAGTGCGCGCCGAGCGCCGCGGTGAG
TACGATGAGCGTCTCGATGTGGAGCTCAAGGTGATTAACCAGATGGGCTTTCCTGGTTACTTCTTGATCGTGATGGAGTT
TATCCAGTGGGGCAAGGATAATGGTATTCCTGTCGGCCCGGGCCGTGGTTCGGGCGCCGGATCACTTGTGGCCTACGCTC
TTAAGATTACCGACTTAGACCCACTCGAATTCGACCTGCTGTTCGAACGTTTCTTGAACCCAGAGCGGGTGTCGATGCCC
GACTTCGACGTCGACTTCTGTATGGATAGACGCGACGAGGTGATTGATCACGTGGCCGAACTCTACGGCCGTGAAGCGGT
ATCGCAAATTATCACCTTCGGTACTATGGCGGCAAAAGCGGTTATCCGTGACGTGGGCCGGGTGCTCGGTCATCCCTACG
GCTTTGTGGATCGTATTTCAAAGCTTATCCCACCAGAGCCTGGGATGACACTGGCCAAAGCTTTTGAAGTGGAGCCAGCA
CTGCAGGAATCTTACGATGCCGATGAGGATGTCAAAGATCTTATCGACATGTGTCGTAAACTTGAGGGCGTCACCCGAAA
CGCGGGTAAACACGCGGGGGGCGTGGTCATCGCGCCCACCAAGATCACCGACTTTTCGCCGCTATACTGCGACGCCGAAG
GTAAAAACCCCGTCACTCAGTTTGATAAAAACGATGTTGAAACCGCAGGGTTAGTGAAGTTCGACTTCCTTGGGCTTAGA
ACGCTCACCATCGTCGATTGGGCGCTGGAAATGATCAACAAGGTGGAGGTCAAAAATGGCCGTTCACCAATACGCATTGA
AGCCATTCCGCTAGACGATCCTGCTTCGTTCCGATTACTGCAACGTTATGAAACCACCGCGGTATTCCAGCTCGAATCCC
GCGGTATGAAGGACTTGATTAAACGCCTGCAGCCCGACTGCTTCGAAGATATGATCGCTCTGGTGGCACTTTTCCGCCCA
GGGCCTCTGCAATCGGGCATGGTGGATAACTTTATCGAGCGTAAGCATGGCCGTGAAGAGGTGTCTTACCCCGATTCCCA
ATACCAGCATGAATCCTTAAAGGAACTACTCTCGCCCACCTACGGCATTATTTTGTACCAAGAGCAGGTGATGCAGATTG
CACAGGTATTGTCGGGTTATACCTTAGGCGGCGCCGACATGCTGCGCCGTGCTATGGGTAAGAAAAAACCTGAGGAGATG
GCCAAGCAGCGGAGTATTTTTAAAGAGGGCGCGATTAAAAACGGTGTCGATGGTGAGCTGTCGATGAAAATCTTCGACCT
CGTGGAAAAGTTCGCCGGTTACGGTTTTAACAAATCTCACTCCGCGGCTTATGCGTTAGTTTCCTATCAAACCCTGTGGC
TGAAGACCCATTTTCCACCGCAATTTATGGCAGCGGTGATGTCTGCCGATATGGATAACACCGATAAAATTGTGACCTTA
GTGGATGAGTGTGAGCGGATGGGGCTCACCATCATTCCGCCGGATGTGAATAAGGGATTATTTAAGTTTACCGTTGATGA
TGATCTGCGGATTGTCTACGGCATCGGCGCCATCAAGGGCGTGGGTGAGGGGCCAGTTGAGTCGATTTTAGAGGCGCGTA
AGGACGGTCCCTTTACAGATTTATTCGACTTTTGTGCCCGTATTGATCTTAAAAAGCTTAACAAGCGGGTGATTGAAAAG
CTTATTTGCGCCGGCGCCTTAGATGCGCTTGGACCACACCGCGCCTCGATGATGGCAACCTTGCCTGAGGCGATAAGCGC
TGCCGATCAGCACGCTAAGGCCGAGGCGATTGGCCAGCATGATATGTTTGGTCTGCTTAATAGCGATCCCGAGGACAGCA
AGCAGCAGTTTGTTGAATGTACTCCGTGGCCGGATAAAATTTGGCTCGAAGGTGAGCGCGAAACCTTAGGGTTGTATTTA
ACGGGCCATCCCATAAATCAATACCTTAAAGAGCTTAAGCATTATACTTCTGGGCGGCTCAAGGATGTGCATCCCACTGA
TCGCGGTAAAACCGTGAAGGCGGCGGGGTTAGTGGTGGCGACCCGCGTGATGCTCACCAAACGCGGCTCGAAAATGGGCT
TGTTGACCTTAGATGACAAGAGCGCTCGGCTCGAGGTGATGCTATTTACCGAAGCCTTTGAGAAGTTTAATCACCTGCTT
GAAAAGGACCGGATCCTTATCTGCGAAGGTGAGGTGAGTTTCGATGATTTTGCCGGTGGCAACCGGATGACGGCGCGCAA
TATTATTGATATTAGTGAGGCGCGTAGCCATTTTGCCAGTGCATTGGAGATTGATTTAGAGGCATCGCAGTTGACTCCGA
GTATGCTCGATAGCATCGAGCAGGCGATAAGTCCATGGCGTAATGGCGCTGTGCCAGTACTGATTAACTACAGTCAAGCT
CAGGCCAAGGGGCAGTTTAGATTGGCTGAAGCCTGGCGAGTTAACCCAAGTGATGAGTTGGTCTTTGCCTTGGAAAGTTT
ACTTGGCCCCCATAAAGTGCGGATTGTATTTCCATAG

Upstream 100 bases:

>100_bases
TCATTTCAGCTTGAGAGCAAAGTCACTAGCCCAAGGGCGGTGACTTTGTTAGTCTGCTTTTTAGTGATTGTTAACCTGCT
ATTCAAAGATAATTCTAACT

Downstream 100 bases:

>100_bases
TGAGTATCAGCCTTAAGCCGAGTTAAGCTTAGGGTTTTCGGTGGGGAAGAGGATGACTGCGCAGGATTTAAGTGTTCATA
TAGCGCGATGGTTAGACAGC

Product: DNA polymerase III subunit alpha

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>1158_residues
MSDPRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGAGIKPIIGADFWMQVPGFEDE
FCAVTIIAMDNEGYQNLTQIISQAYLRGQVQGRVVIDQEWLITYNPGILLLSGGKEGDIGKALLKGNNTQVESLCEFYQQ
HFEGRYFLELLRTGRPDEERYLHMAVGVAQEKGIPVVATNQVVFLKPEDFEAHEIRVAIHDGFTLADPRRPKKYSEQQYL
RSEDEMCELFADIPAALANTVEIAKRCNVTIRLNEYFLPNFPTGDMSIEDFLVDCSKKGLEERLAFLFPDPQVRAERRGE
YDERLDVELKVINQMGFPGYFLIVMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP
DFDVDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPGMTLAKAFEVEPA
LQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLR
TLTIVDWALEMINKVEVKNGRSPIRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRP
GPLQSGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPPQFMAAVMSADMDNTDKIVTL
VDECERMGLTIIPPDVNKGLFKFTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFTDLFDFCARIDLKKLNKRVIEK
LICAGALDALGPHRASMMATLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVECTPWPDKIWLEGERETLGLYL
TGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATRVMLTKRGSKMGLLTLDDKSARLEVMLFTEAFEKFNHLL
EKDRILICEGEVSFDDFAGGNRMTARNIIDISEARSHFASALEIDLEASQLTPSMLDSIEQAISPWRNGAVPVLINYSQA
QAKGQFRLAEAWRVNPSDELVFALESLLGPHKVRIVFP

Sequences:
NA

Specific function: NA

COG id: COG0587

COG function: function code L; DNA polymerase III, alpha subunit

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA