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The map label for this gene is ydhC [H]

Identifier: 23502810

GI number: 23502810

Start: 1891018

End: 1891701

Strand: Reverse

Name: ydhC [H]

Synonym: BR1961

Alternate gene names: 23502810

Gene position: 1891701-1891018 (Counterclockwise)

Preceding gene: 23502811

Following gene: 23502802

Centisome position: 89.75

GC content: 51.9

Gene sequence:

>684_bases
ATGGTAAAAGAGCCACGTTTTAGCAGTCGTCTGGAAAAGCCCCTCACGACTGCGCAATATGTCGCCGATTATCTGCGCAA
GCGCATGTTATCGGGCGAAATACGCGCGGGCGACCGCCTGAAACAGAACCATTTGGCGGAAATGCTGGGGGTTAGTTCGA
CGCCGGTTCGTGAGGCCCTGCGCGATCTTGCGGCAGAAGGGCTGGTTCGGCTCGATGCGCGTTCCGGCTGTGTTGCCCGC
GGGCTGACCTTTCAGGATGCGGAAGATATCTATACGGCTCGTTTGGCGCTGGAACCCATATTGCTAAAGCGTAATTTCGC
GAGAATTACGCCGGAAATCCTTGAGGAATGTGAAACCATCAATGAAAAGATGAGAGCCGAAACGGATTTGGTGGTCTGGG
CCAGACTGAACAATGAGTTTCATATGAAGCTTCTCGGGATCGATTATCCGTCGCGGATGACCGAGATTGTCCAGCAGCTG
TTTGAATATGCCGAGCCTTTCGTTGCCATTTCGCTCTACGCGCATGAGGAGCAGTTGAAGCGAAGCTATGACGAGCATCG
CCTGCTTCTTGAGAAGCATCGGCAAAACGATCTCGAAGCGGCAACAGAGCTTTTATATCGTCACCAGAGAATGACGCTCT
CGCTGATTGAGAAAAAAATGAAAGATAGATCGGTTGCGTTGTAA

Upstream 100 bases:

>100_bases
TATTGCTGTGGGCACTACTGGCAGCGGGTAAAAATCTGGAAGAAACAAGAGCTAACTTCCTGCTCTATAACCCATAACTG
CCGATCGAGATTCCGCATCC

Downstream 100 bases:

>100_bases
ATTGTCGTTTGAGTGCACGCGGTGCCGTTGAGGCAAATACACGGCTGTCTTTCAGCAACAAAGGGCTGCGTTTCGGTTGC
TTGTTCGGCACTTTTGGCCC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MVKEPRFSSRLEKPLTTAQYVADYLRKRMLSGEIRAGDRLKQNHLAEMLGVSSTPVREALRDLAAEGLVRLDARSGCVAR
GLTFQDAEDIYTARLALEPILLKRNFARITPEILEECETINEKMRAETDLVVWARLNNEFHMKLLGIDYPSRMTEIVQQL
FEYAEPFVAISLYAHEEQLKRSYDEHRLLLEKHRQNDLEAATELLYRHQRMTLSLIEKKMKDRSVAL

Sequences:

>Translated_227_residues
MVKEPRFSSRLEKPLTTAQYVADYLRKRMLSGEIRAGDRLKQNHLAEMLGVSSTPVREALRDLAAEGLVRLDARSGCVAR
GLTFQDAEDIYTARLALEPILLKRNFARITPEILEECETINEKMRAETDLVVWARLNNEFHMKLLGIDYPSRMTEIVQQL
FEYAEPFVAISLYAHEEQLKRSYDEHRLLLEKHRQNDLEAATELLYRHQRMTLSLIEKKMKDRSVAL
>Mature_227_residues
MVKEPRFSSRLEKPLTTAQYVADYLRKRMLSGEIRAGDRLKQNHLAEMLGVSSTPVREALRDLAAEGLVRLDARSGCVAR
GLTFQDAEDIYTARLALEPILLKRNFARITPEILEECETINEKMRAETDLVVWARLNNEFHMKLLGIDYPSRMTEIVQQL
FEYAEPFVAISLYAHEEQLKRSYDEHRLLLEKHRQNDLEAATELLYRHQRMTLSLIEKKMKDRSVAL

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26404; Mature: 26404

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKEPRFSSRLEKPLTTAQYVADYLRKRMLSGEIRAGDRLKQNHLAEMLGVSSTPVREAL
CCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHH
RDLAAEGLVRLDARSGCVARGLTFQDAEDIYTARLALEPILLKRNFARITPEILEECETI
HHHHHHHHEEECCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
NEKMRAETDLVVWARLNNEFHMKLLGIDYPSRMTEIVQQLFEYAEPFVAISLYAHEEQLK
HHHHHHHCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHH
RSYDEHRLLLEKHRQNDLEAATELLYRHQRMTLSLIEKKMKDRSVAL
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVKEPRFSSRLEKPLTTAQYVADYLRKRMLSGEIRAGDRLKQNHLAEMLGVSSTPVREAL
CCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHH
RDLAAEGLVRLDARSGCVARGLTFQDAEDIYTARLALEPILLKRNFARITPEILEECETI
HHHHHHHHEEECCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
NEKMRAETDLVVWARLNNEFHMKLLGIDYPSRMTEIVQQLFEYAEPFVAISLYAHEEQLK
HHHHHHHCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHH
RSYDEHRLLLEKHRQNDLEAATELLYRHQRMTLSLIEKKMKDRSVAL
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]