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The map label for this gene is yhcM [H]

Identifier: 23502779

GI number: 23502779

Start: 1861887

End: 1863050

Strand: Reverse

Name: yhcM [H]

Synonym: BR1929

Alternate gene names: 23502779

Gene position: 1863050-1861887 (Counterclockwise)

Preceding gene: 23502780

Following gene: 23502778

Centisome position: 88.39

GC content: 57.65

Gene sequence:

>1164_bases
ATGTCTTTTGATGGCAATCTGAAAGCCTTCCCTTCCGTCCGCGAACGTTATGAAGCCATGGTTGCAGCGGGCGATGTCGA
AACCGACCCCGCCCAGCTTGAACTTACCAGCCGATATGACAGGCTGATCGAGGAGATTTGCTCAAAACGCCTTTCGCGCA
AGTCGAGCGCGCTCGGCTGGCTGTTCGGCAAGCGCAGGGAAACGGCCGCGACCATCAAGGGGCTTTATGTCCACGGTGAG
GTGGGGCGCGGCAAGACCATGCTGATGGACATGTTCTTCCAGCTTTTGCCGGTGGAGCGCAAGCGGCGCGCGCATTTCAA
CGATTTCATGGCCGATGTGCATGAGCGCATTTATGCGCATCGTCAGGCGCACAAGCGCGGTGAAACCAAACAGGATGATC
CAATCCCGCCGGTGGCGGAGGCGCTGAGCCAGCAGGCATGGGTTCTGTGTTTCGATGAATTTACCGTGACCGACATTGCG
GACGCGATGATCCTGTCGCGCCTGTTCAGTGCGCTGTTCTCGCGCGGTGTGGTGCTGGTCGCGACCTCGAACGTCGCGCC
GGACAATCTCTACCGCGACGGGTTGAACCGTCAGCTTTTCCTGCCTTTCATCGACATTCTCAAGAGCCATGTCGATGTCA
TCAATCTCGATTCGCGCACGGATTACCGTCTGGAAAAGCTTGACCGCCAGCCGGTCTATCTTTCCCCGCTGGGGCCTGAA
ACCGAGCGCCGCATGGATGCGGCCTGGGCGGCACACAAGAACGGTGCGGAAGAAAAGCCTGACGTGATCCATATCAAGGG
GCGTGATATCGAAGTGCCGCGCGCTGCTGCTGGCGCTGCACGGTTCTCGTTCGATGATCTTTGTGCCAGGCCGCTTGGTG
CATCCGACTATATAGCGATCGCCAACCGCTATCCGACGCTGTTTATCGATAATGTGCCGGTACTGGATTATTCGCGCCGC
AACGAGGCAAAGCGGTTTATTCTGCTGATCGACGTGCTTTACGATCATCATGCGCGGCTGTTCGTTTCGGCTGAGGCGCA
ACCGGAGAAGCTTTATATCGCCAATAGCGGCACGGAGGCTTTTGAGTTCGACCGCACGGCTTCACGTCTTTTCGAGATGC
AGAGCGCGGAATATCTGGATGGGATACCCGAAGGCGTAGCCTGA

Upstream 100 bases:

>100_bases
ACAGGGCGGAGCTTCTTCGGGCAGCTCCGCCGAATTTTAAGGCGCACCGCGAATGATTTCGGCAGATGCGCATCAGTCCA
AGGTTTCACTGGAACCTCTC

Downstream 100 bases:

>100_bases
GAGAAATTCAAAATGTAGGCGCAGCCTGCCGGGGCATGGTTCGACGGTCGATGAAGCGGGATGGGGCATCCCTGTCATGG
GCTGGACTTATATATTTCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 386

Protein sequence:

>387_residues
MSFDGNLKAFPSVRERYEAMVAAGDVETDPAQLELTSRYDRLIEEICSKRLSRKSSALGWLFGKRRETAATIKGLYVHGE
VGRGKTMLMDMFFQLLPVERKRRAHFNDFMADVHERIYAHRQAHKRGETKQDDPIPPVAEALSQQAWVLCFDEFTVTDIA
DAMILSRLFSALFSRGVVLVATSNVAPDNLYRDGLNRQLFLPFIDILKSHVDVINLDSRTDYRLEKLDRQPVYLSPLGPE
TERRMDAAWAAHKNGAEEKPDVIHIKGRDIEVPRAAAGAARFSFDDLCARPLGASDYIAIANRYPTLFIDNVPVLDYSRR
NEAKRFILLIDVLYDHHARLFVSAEAQPEKLYIANSGTEAFEFDRTASRLFEMQSAEYLDGIPEGVA

Sequences:

>Translated_387_residues
MSFDGNLKAFPSVRERYEAMVAAGDVETDPAQLELTSRYDRLIEEICSKRLSRKSSALGWLFGKRRETAATIKGLYVHGE
VGRGKTMLMDMFFQLLPVERKRRAHFNDFMADVHERIYAHRQAHKRGETKQDDPIPPVAEALSQQAWVLCFDEFTVTDIA
DAMILSRLFSALFSRGVVLVATSNVAPDNLYRDGLNRQLFLPFIDILKSHVDVINLDSRTDYRLEKLDRQPVYLSPLGPE
TERRMDAAWAAHKNGAEEKPDVIHIKGRDIEVPRAAAGAARFSFDDLCARPLGASDYIAIANRYPTLFIDNVPVLDYSRR
NEAKRFILLIDVLYDHHARLFVSAEAQPEKLYIANSGTEAFEFDRTASRLFEMQSAEYLDGIPEGVA
>Mature_386_residues
SFDGNLKAFPSVRERYEAMVAAGDVETDPAQLELTSRYDRLIEEICSKRLSRKSSALGWLFGKRRETAATIKGLYVHGEV
GRGKTMLMDMFFQLLPVERKRRAHFNDFMADVHERIYAHRQAHKRGETKQDDPIPPVAEALSQQAWVLCFDEFTVTDIAD
AMILSRLFSALFSRGVVLVATSNVAPDNLYRDGLNRQLFLPFIDILKSHVDVINLDSRTDYRLEKLDRQPVYLSPLGPET
ERRMDAAWAAHKNGAEEKPDVIHIKGRDIEVPRAAAGAARFSFDDLCARPLGASDYIAIANRYPTLFIDNVPVLDYSRRN
EAKRFILLIDVLYDHHARLFVSAEAQPEKLYIANSGTEAFEFDRTASRLFEMQSAEYLDGIPEGVA

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=403, Percent_Identity=35.9801488833747, Blast_Score=258, Evalue=7e-69,
Organism=Escherichia coli, GI1789627, Length=370, Percent_Identity=41.8918918918919, Blast_Score=271, Evalue=6e-74,
Organism=Caenorhabditis elegans, GI17505769, Length=413, Percent_Identity=34.6246973365617, Blast_Score=248, Evalue=5e-66,
Organism=Saccharomyces cerevisiae, GI6320783, Length=396, Percent_Identity=33.0808080808081, Blast_Score=192, Evalue=1e-49,
Organism=Drosophila melanogaster, GI20129913, Length=421, Percent_Identity=34.4418052256532, Blast_Score=223, Evalue=2e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 43920; Mature: 43789

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFDGNLKAFPSVRERYEAMVAAGDVETDPAQLELTSRYDRLIEEICSKRLSRKSSALGW
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHH
LFGKRRETAATIKGLYVHGEVGRGKTMLMDMFFQLLPVERKRRAHFNDFMADVHERIYAH
HHCCCHHHHHHHEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
RQAHKRGETKQDDPIPPVAEALSQQAWVLCFDEFTVTDIADAMILSRLFSALFSRGVVLV
HHHHHCCCCCCCCCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCEEEE
ATSNVAPDNLYRDGLNRQLFLPFIDILKSHVDVINLDSRTDYRLEKLDRQPVYLSPLGPE
EECCCCCCHHHHHCCCCEEHHHHHHHHHHHCCEEECCCCCCHHHHHCCCCCEEECCCCCC
TERRMDAAWAAHKNGAEEKPDVIHIKGRDIEVPRAAAGAARFSFDDLCARPLGASDYIAI
HHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHCCCCCCCHHHHHCCCCCCCCEEEE
ANRYPTLFIDNVPVLDYSRRNEAKRFILLIDVLYDHHARLFVSAEAQPEKLYIANSGTEA
ECCCCEEEECCCCCCCCCCCCCHHHEEEEHHHHHCCCEEEEEEECCCCCEEEEECCCCCH
FEFDRTASRLFEMQSAEYLDGIPEGVA
HHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SFDGNLKAFPSVRERYEAMVAAGDVETDPAQLELTSRYDRLIEEICSKRLSRKSSALGW
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHH
LFGKRRETAATIKGLYVHGEVGRGKTMLMDMFFQLLPVERKRRAHFNDFMADVHERIYAH
HHCCCHHHHHHHEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
RQAHKRGETKQDDPIPPVAEALSQQAWVLCFDEFTVTDIADAMILSRLFSALFSRGVVLV
HHHHHCCCCCCCCCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCEEEE
ATSNVAPDNLYRDGLNRQLFLPFIDILKSHVDVINLDSRTDYRLEKLDRQPVYLSPLGPE
EECCCCCCHHHHHCCCCEEHHHHHHHHHHHCCEEECCCCCCHHHHHCCCCCEEECCCCCC
TERRMDAAWAAHKNGAEEKPDVIHIKGRDIEVPRAAAGAARFSFDDLCARPLGASDYIAI
HHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHCCCCCCCHHHHHCCCCCCCCEEEE
ANRYPTLFIDNVPVLDYSRRNEAKRFILLIDVLYDHHARLFVSAEAQPEKLYIANSGTEA
ECCCCEEEECCCCCCCCCCCCCHHHEEEEHHHHHCCCEEEEEEECCCCCEEEEECCCCCH
FEFDRTASRLFEMQSAEYLDGIPEGVA
HHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]