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The map label for this gene is sdhD [H]

Identifier: 23502754

GI number: 23502754

Start: 1838645

End: 1839040

Strand: Reverse

Name: sdhD [H]

Synonym: BR1903

Alternate gene names: 23502754

Gene position: 1839040-1838645 (Counterclockwise)

Preceding gene: 23502755

Following gene: 23502753

Centisome position: 87.25

GC content: 54.04

Gene sequence:

>396_bases
ATGAACGGCATGAATAACGATATGCGTACTCCGCTCGGGAAGGTTCGCGGTCTGGGTTCGGCAAAAGAAGGCACCAGCCA
TTTCTGGTATCAGCGCCTGAGCGCCGTTGCCCTGGTGCCGCTGGTTCTGTTTTTCATCGGCCTGGTCATTTCGCTCAATG
GCGCAAGCTATGCAGAAGTCCGGGCTGCCCTGTCACATCCCTTCACCGCTGTGGTGATGGCGCTGTTTGTCCTCATGGGC
GTTTATCACATGCGCCTGGGTATGCAGGTTATTATTGAAGATTATGTGCATGGCGAAGGCATGAAGATCGTGCTGGTGAT
GCTGAACACCTTCTTTACGGTGGTGGTTGGTCTTGCCTGCGTTTTCGCGATCCTCAAGCTCAGCTTTGGAGGTTGA

Upstream 100 bases:

>100_bases
ACCGCATCCAAGATCGCATGGGCTTCCGTGGTCTTTTCAGTGGTCGCCACGATCCTCGTCTGGGTCGTCGCCTATTCGGT
GCGCTAGGAGGGACTGGTTC

Downstream 100 bases:

>100_bases
TGGCCCGATGGCTAGTGCAGTAAACAATGCGGCGCCCGCCGCTGCAAGCAAGTACACCTATGTCGATTACAAGTTCGACG
TGGTGGTGGTCGGAGCCGGC

Product: succinate dehydrogenase, hydrophobic membrane anchor protein

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MNGMNNDMRTPLGKVRGLGSAKEGTSHFWYQRLSAVALVPLVLFFIGLVISLNGASYAEVRAALSHPFTAVVMALFVLMG
VYHMRLGMQVIIEDYVHGEGMKIVLVMLNTFFTVVVGLACVFAILKLSFGG

Sequences:

>Translated_131_residues
MNGMNNDMRTPLGKVRGLGSAKEGTSHFWYQRLSAVALVPLVLFFIGLVISLNGASYAEVRAALSHPFTAVVMALFVLMG
VYHMRLGMQVIIEDYVHGEGMKIVLVMLNTFFTVVVGLACVFAILKLSFGG
>Mature_131_residues
MNGMNNDMRTPLGKVRGLGSAKEGTSHFWYQRLSAVALVPLVLFFIGLVISLNGASYAEVRAALSHPFTAVVMALFVLMG
VYHMRLGMQVIIEDYVHGEGMKIVLVMLNTFFTVVVGLACVFAILKLSFGG

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2142

COG function: function code C; Succinate dehydrogenase, hydrophobic anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014312
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 14255; Mature: 14255

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
6.9 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
6.9 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGMNNDMRTPLGKVRGLGSAKEGTSHFWYQRLSAVALVPLVLFFIGLVISLNGASYAEV
CCCCCCHHHCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
RAALSHPFTAVVMALFVLMGVYHMRLGMQVIIEDYVHGEGMKIVLVMLNTFFTVVVGLAC
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
VFAILKLSFGG
HHHHHHHHCCC
>Mature Secondary Structure
MNGMNNDMRTPLGKVRGLGSAKEGTSHFWYQRLSAVALVPLVLFFIGLVISLNGASYAEV
CCCCCCHHHCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
RAALSHPFTAVVMALFVLMGVYHMRLGMQVIIEDYVHGEGMKIVLVMLNTFFTVVVGLAC
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
VFAILKLSFGG
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA