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The map label for this gene is ydeB [H]

Identifier: 23502623

GI number: 23502623

Start: 1696408

End: 1696983

Strand: Reverse

Name: ydeB [H]

Synonym: BR1766

Alternate gene names: 23502623

Gene position: 1696983-1696408 (Counterclockwise)

Preceding gene: 23502624

Following gene: 23502622

Centisome position: 80.51

GC content: 55.38

Gene sequence:

>576_bases
ATGTCATCCCAGCAGAAAAAGTCTCCGGTAGCTCGTGGCGGGTTTAAGGCAGGTGAGGCTATTGTATATCCGGCTCACGG
TGTCGGCCAGATCGTGACCATCGAGGAGCAGGAAGTGGCGGGCCACAAGCTTGAACTTTTTGTTATCGATTTTGAAAAAG
ACAAGATGCGCCTCAAGGTGCCGGTCGCCAAGGCCGCATCGATTGGTATGCGCAAGCTCTCTGAAACCGACTATGTCGAA
CGTGCCCTCAAGGTGGTGCAGGGCCGTGCCCGTGTGAAGCGCACCATGTGGTCGCGCCGGGCGCAGGAATATGATGCGAA
GATCAATTCGGGCGACCTGATTTCTATCTCGGAAGTGGTGCGTGATCTTTACCGTGCCGAAAACCAGCCGGAACAGTCCT
ATTCCGAACGCCAGCTTTATGAAGCGGCGCTTGATCGCATGGCGCGCGAAATTGCTGCCGTGAACAAGCTTTCGGAAACC
GAGGCTGTGCGCCTGATTGAAGTCAATCTCGCCAAGGGACCGAAGCGCGGCAAGGCCGAAGCTGAACTTGACGATGATGA
AGTCGAAGCAGCATAA

Upstream 100 bases:

>100_bases
AGCCGATAATCAGCGTCCGTGCTCCACTTCCGGGGGTGCGGTCGATCACCATGTGTTAACCGGCGGGTCGCGCCGGGCAC
AACAGGGAGTAATGAAGCGT

Downstream 100 bases:

>100_bases
GCTTTGCTTCCCTGTTCTTCAAAAGCCCGCTGATCCAGCGGGCTTTTTTGTTGGGAGAACGGAAATTGCGCAAAATTTTA
TCGGATTTTGCAATGGCTCG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MSSQQKKSPVARGGFKAGEAIVYPAHGVGQIVTIEEQEVAGHKLELFVIDFEKDKMRLKVPVAKAASIGMRKLSETDYVE
RALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVVRDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSET
EAVRLIEVNLAKGPKRGKAEAELDDDEVEAA

Sequences:

>Translated_191_residues
MSSQQKKSPVARGGFKAGEAIVYPAHGVGQIVTIEEQEVAGHKLELFVIDFEKDKMRLKVPVAKAASIGMRKLSETDYVE
RALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVVRDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSET
EAVRLIEVNLAKGPKRGKAEAELDDDEVEAA
>Mature_190_residues
SSQQKKSPVARGGFKAGEAIVYPAHGVGQIVTIEEQEVAGHKLELFVIDFEKDKMRLKVPVAKAASIGMRKLSETDYVER
ALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVVRDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSETE
AVRLIEVNLAKGPKRGKAEAELDDDEVEAA

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 21362; Mature: 21230

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSQQKKSPVARGGFKAGEAIVYPAHGVGQIVTIEEQEVAGHKLELFVIDFEKDKMRLKV
CCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEHHHCCCCEEEEEEEEECCCCEEEEC
PVAKAASIGMRKLSETDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVV
CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHH
RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSETEAVRLIEVNLAKGPKRGKAE
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCC
AELDDDEVEAA
CCCCCHHCCCC
>Mature Secondary Structure 
SSQQKKSPVARGGFKAGEAIVYPAHGVGQIVTIEEQEVAGHKLELFVIDFEKDKMRLKV
CCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEHHHCCCCEEEEEEEEECCCCEEEEC
PVAKAASIGMRKLSETDYVERALKVVQGRARVKRTMWSRRAQEYDAKINSGDLISISEVV
CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHH
RDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKLSETEAVRLIEVNLAKGPKRGKAE
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCC
AELDDDEVEAA
CCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]