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The map label for this gene is ybgF [C]

Identifier: 23502551

GI number: 23502551

Start: 1638506

End: 1639972

Strand: Reverse

Name: ybgF [C]

Synonym: BR1693

Alternate gene names: 23502551

Gene position: 1639972-1638506 (Counterclockwise)

Preceding gene: 23502552

Following gene: 23502550

Centisome position: 77.81

GC content: 59.92

Gene sequence:

>1467_bases
ATGAGGAAACCAATGAGAAAAGTGACGCTGGCCATGGCCATGCTGCCGCTTTTGGCAAGTGCTCCGGTGCTGGCGGCATC
TGTTTCTTCGCAGGAAAAAGCCATCTATCTCGCGCAGGCTGGCGATCCGGGCATGAGCCAGTTCGCCCAGCAAGTGTGCA
CTATTGCGCGTCAGAATGCACAGTCCTATTCCCGGATTTTGCAGCTTCGCGACAAGATGCTGAAAATCCAGCGGGACAAT
GAAGCCCGTTTTCAGGCGCTGGAAAAGGGACGCGGAGGCGCACAGAATCATGTCAGCATCGGCTCGACCGCAATCCTTGA
CGATGCCATGCGCGGTAATGGCGGCGTCTTTGGCCAGGGTGGCGGCTATCAGAGTCCCGGCATGCAGCAGGAACTGGTCC
GCAACCTGACCGGCAAGGTCGAGGATGTGGATGCGCAGATTTCCTTCACCGACAACCAGTTGCAAAAAACCCAGGAAGAC
AATGAATTCCGGTTTGAGGAACTGGAAAAGAAAAAGGGCCTGACGCCGCCGCAGGCGCAGCGCACAAGCCAGCCTGCTCA
GCCTGCGCCCGCACCGGGCGCTGACCTTTGTGCGCAGGGCATGGGCAATCCCGTCGCGATTGCAGACGCATTGAGCGCGC
GCGCGGAAGCCATGAATTTCCAGATTCTGGAAATGCAGGATCAGATGCAGAAGATGCAGGAGGAAAACGAACGCCGTTTT
CAGGCGCTGGAATCGGGTGGCCGCGCGGATGCGGGCGGTTCTTCCCGCGATACGTCTCTTGCCGATGCGGGTGCAGCCGG
AAGCCTTGATGGCGGGGTTTCCGGTTCTGCCGGTTCGCAGGCTATGGCCTCTTCGTCTTCTCAGCAATCTGCCGCCGATT
CCGTGGCTATTGGTTCCGCCGCCTCGCAGGGCGGCCCGGCAAGAGGCGAGCCGCCGCAAACGCTCGGCTCGATCCGCTTC
GACACCAATGGCAATGTAATCGGCGAAACGCTCAACGCCGCGCCGCAGCCCGTGCAGCAAGGGGGAGGGGGGATTCAGAC
CGGCGGTGCCGCCAATGATGCGGTTGCCTCGCTTCCCACCGACGACAATCCCAACTCGCTTTATCAGGCTGCGTATCAAT
ATCTCATGTCTGGTGATTACAAGGCTGCCGAAGCGGGCTTCCGCGAGCATGTAAAGCGCTATCCTGCCGACCCGATGACG
GCGGAGGCGCGCTTCTGGCTTGGCGAATCGCTCTATGGTCAGGGCCGTTACCCCGAAGCTGCAACTCTTTTCATCGATAC
GCAGCGCGATTATCCCGATTCCAAGCGCGCGCCGGAAAACATGTTCAAGCTTGGCATGGCGCTGGAGAAAATGGACAATC
ATGATGTCGCCTGCGCGACCTTCGCGCAGATTCCCCAACGCTATCCCAAGGCGGCGCCAGCCATTTTGAAGCGTGTCGCC
GATGAGCGCAGTCGCGCCAAGTGCTGA

Upstream 100 bases:

>100_bases
GCTCGCGGGAGCATTCAAGACGCATTCAAAATGCATTTAGGCGCGGTGCTTGATTATCCTGTTCATTTTATCGCAGGGCA
AATAGCAGGGGCAAAAAGGA

Downstream 100 bases:

>100_bases
TTGCGGAGTAAGTTCGTGGGGCTTTCCCCTGTCAATATCTTCAAGCCGTTCGGTCTGGGGCGTGCGAAAGCGGTGATTGC
TGCCGTTTCGGGTGGCAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: L-Pal System YbgF; TPR Repeat-Containing Protein; TPR RepeatMolluscan Rhodopsin C-Terminal Domain Protein; TPR Repeat Protein; L System Periplasmic Component YbgF; Tetratricopeptide TPR2 Protein

Number of amino acids: Translated: 488; Mature: 488

Protein sequence:

>488_residues
MRKPMRKVTLAMAMLPLLASAPVLAASVSSQEKAIYLAQAGDPGMSQFAQQVCTIARQNAQSYSRILQLRDKMLKIQRDN
EARFQALEKGRGGAQNHVSIGSTAILDDAMRGNGGVFGQGGGYQSPGMQQELVRNLTGKVEDVDAQISFTDNQLQKTQED
NEFRFEELEKKKGLTPPQAQRTSQPAQPAPAPGADLCAQGMGNPVAIADALSARAEAMNFQILEMQDQMQKMQEENERRF
QALESGGRADAGGSSRDTSLADAGAAGSLDGGVSGSAGSQAMASSSSQQSAADSVAIGSAASQGGPARGEPPQTLGSIRF
DTNGNVIGETLNAAPQPVQQGGGGIQTGGAANDAVASLPTDDNPNSLYQAAYQYLMSGDYKAAEAGFREHVKRYPADPMT
AEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSKRAPENMFKLGMALEKMDNHDVACATFAQIPQRYPKAAPAILKRVA
DERSRAKC

Sequences:

>Translated_488_residues
MRKPMRKVTLAMAMLPLLASAPVLAASVSSQEKAIYLAQAGDPGMSQFAQQVCTIARQNAQSYSRILQLRDKMLKIQRDN
EARFQALEKGRGGAQNHVSIGSTAILDDAMRGNGGVFGQGGGYQSPGMQQELVRNLTGKVEDVDAQISFTDNQLQKTQED
NEFRFEELEKKKGLTPPQAQRTSQPAQPAPAPGADLCAQGMGNPVAIADALSARAEAMNFQILEMQDQMQKMQEENERRF
QALESGGRADAGGSSRDTSLADAGAAGSLDGGVSGSAGSQAMASSSSQQSAADSVAIGSAASQGGPARGEPPQTLGSIRF
DTNGNVIGETLNAAPQPVQQGGGGIQTGGAANDAVASLPTDDNPNSLYQAAYQYLMSGDYKAAEAGFREHVKRYPADPMT
AEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSKRAPENMFKLGMALEKMDNHDVACATFAQIPQRYPKAAPAILKRVA
DERSRAKC
>Mature_488_residues
MRKPMRKVTLAMAMLPLLASAPVLAASVSSQEKAIYLAQAGDPGMSQFAQQVCTIARQNAQSYSRILQLRDKMLKIQRDN
EARFQALEKGRGGAQNHVSIGSTAILDDAMRGNGGVFGQGGGYQSPGMQQELVRNLTGKVEDVDAQISFTDNQLQKTQED
NEFRFEELEKKKGLTPPQAQRTSQPAQPAPAPGADLCAQGMGNPVAIADALSARAEAMNFQILEMQDQMQKMQEENERRF
QALESGGRADAGGSSRDTSLADAGAAGSLDGGVSGSAGSQAMASSSSQQSAADSVAIGSAASQGGPARGEPPQTLGSIRF
DTNGNVIGETLNAAPQPVQQGGGGIQTGGAANDAVASLPTDDNPNSLYQAAYQYLMSGDYKAAEAGFREHVKRYPADPMT
AEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSKRAPENMFKLGMALEKMDNHDVACATFAQIPQRYPKAAPAILKRVA
DERSRAKC

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786963, Length=87, Percent_Identity=31.0344827586207, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51909; Mature: 51909

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKPMRKVTLAMAMLPLLASAPVLAASVSSQEKAIYLAQAGDPGMSQFAQQVCTIARQNA
CCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
QSYSRILQLRDKMLKIQRDNEARFQALEKGRGGAQNHVSIGSTAILDDAMRGNGGVFGQG
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
GGYQSPGMQQELVRNLTGKVEDVDAQISFTDNQLQKTQEDNEFRFEELEKKKGLTPPQAQ
CCCCCCCHHHHHHHHHCCCCCCCCCEEEECHHHHHHHCCCCCHHHHHHHHHCCCCCCHHH
RTSQPAQPAPAPGADLCAQGMGNPVAIADALSARAEAMNFQILEMQDQMQKMQEENERRF
HCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCHHEEHHHHHHHHHHHHHHHHH
QALESGGRADAGGSSRDTSLADAGAAGSLDGGVSGSAGSQAMASSSSQQSAADSVAIGSA
HHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCC
ASQGGPARGEPPQTLGSIRFDTNGNVIGETLNAAPQPVQQGGGGIQTGGAANDAVASLPT
CCCCCCCCCCCCHHHCCEEECCCCCCHHHHHCCCCCHHHHCCCCCCCCCCCCCCCEECCC
DDNPNSLYQAAYQYLMSGDYKAAEAGFREHVKRYPADPMTAEARFWLGESLYGQGRYPEA
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHCCCCCCCCE
ATLFIDTQRDYPDSKRAPENMFKLGMALEKMDNHDVACATFAQIPQRYPKAAPAILKRVA
EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
DERSRAKC
HHHHHCCC
>Mature Secondary Structure
MRKPMRKVTLAMAMLPLLASAPVLAASVSSQEKAIYLAQAGDPGMSQFAQQVCTIARQNA
CCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
QSYSRILQLRDKMLKIQRDNEARFQALEKGRGGAQNHVSIGSTAILDDAMRGNGGVFGQG
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
GGYQSPGMQQELVRNLTGKVEDVDAQISFTDNQLQKTQEDNEFRFEELEKKKGLTPPQAQ
CCCCCCCHHHHHHHHHCCCCCCCCCEEEECHHHHHHHCCCCCHHHHHHHHHCCCCCCHHH
RTSQPAQPAPAPGADLCAQGMGNPVAIADALSARAEAMNFQILEMQDQMQKMQEENERRF
HCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCHHEEHHHHHHHHHHHHHHHHH
QALESGGRADAGGSSRDTSLADAGAAGSLDGGVSGSAGSQAMASSSSQQSAADSVAIGSA
HHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCC
ASQGGPARGEPPQTLGSIRFDTNGNVIGETLNAAPQPVQQGGGGIQTGGAANDAVASLPT
CCCCCCCCCCCCHHHCCEEECCCCCCHHHHHCCCCCHHHHCCCCCCCCCCCCCCCEECCC
DDNPNSLYQAAYQYLMSGDYKAAEAGFREHVKRYPADPMTAEARFWLGESLYGQGRYPEA
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHCCCCCCCCE
ATLFIDTQRDYPDSKRAPENMFKLGMALEKMDNHDVACATFAQIPQRYPKAAPAILKRVA
EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
DERSRAKC
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA