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The map label for this gene is rbsA-2 [C]

Identifier: 23502493

GI number: 23502493

Start: 1580018

End: 1581478

Strand: Reverse

Name: rbsA-2 [C]

Synonym: BR1632

Alternate gene names: 23502493

Gene position: 1581478-1580018 (Counterclockwise)

Preceding gene: 23502496

Following gene: 23502492

Centisome position: 75.03

GC content: 56.06

Gene sequence:

>1461_bases
GTGGAGGGGCTCAAGAAGTCCTTTGGCGGTGTTGCTGCCTTGCGGGATGGGCGGCTGCAATTGCGTACCGGCTCGGTACA
TGCGCTGTGCGGCGGCAATGGCGCGGGCAAATCCACGTTTTTGAAAATCCTGATGGGCATTCATGCCCGCGATGGTGGAC
ATATCCGCCGGCGTGGAAAAGAGGTTACGTATTCCAGCCCCGCCGAAGCGTTGCAGGCGGGTATCGCGATCATCGAACAG
GAGCTAAGCCCCGTTCCCCATATGACCGTGGCGGAGAATATCTATTTGGGCAGGGAGCCGCTTCGCCGTTTCGGTGGCAT
CGATTTCAAGACGATGAACCTCAATGCCCAGAAGCTTTTGGACCAGCTTGAGTTCAAGATTCGCGCCAACCAGTTCATGA
TGAACCTGTCTGTCGCGCAGGTGCAGCTTGTGGAAATAGCCAAGGCGCTCAGTCACGACGCTGAAGTCATTTTCATGGAC
GAACCGACATCGGCCATTGGTGAAAAAGAAGCACAGCAGCTTTTTGCAGCGATAGAGCGTTTGAAAGCGAGCGGAAAAGG
CATTGTCTATGTCTCCCATCGCCTGTCGGAAATTTTCCAGATTGCCGATAGCTATACCGTGTTTCGCGACGGCAGTTATA
TCGATAGCGGCGATCTCGGTGGCATCACCCGTGCGGAACTGATCCATATGATCGTCGGGCGGGAACTGGGTGAGGAATAT
ATCAAGACGAATGCGCCTACGGAAATACCGGGCGTCGAGGTTTCCGGCCTCAGCGCGCCCGGCAAGATAACCGACATTTC
CTTTACCGCGCATAAGGGCGAGATTTTTGGCATTTACGGGTTGATGGGGTCAGGCCGCTCGGAAATATTCAACTGTCTTT
TCGGATTGGAGAAAGCCTCCCAAGGAACAATTCGGCTTGAAGGCGAACCCGTCACCGTCCGGCGCCCCGCGGACGCCGTG
GCTCTGGGGCTGGCTTTTGTGACGGAAGATCGCAAGCTGACCGGCCTCAATCTCGGCGACAGCGTTCGCAACAATATATG
CCTTGCCAGCCTTCCCGAGATGAGTCCGCATTTTTCAATGAATCGGCGTGCGGAATCGGCCGCCAGCAGGGAGATGATCG
AGCGTTTCAGGATCAAGGTTGCGCACGACACGATGGCCGTTTCGGGCCTTTCCGGCGGCAACCAGCAGAAGGTCGTGCTC
GGAAAATGGTTCCTGCGAAAGCCACGCGTTCTGCTGCTCGATGAACCCACTCGCGGTGTCGATGTGGGTGCAAAACAGGA
AATTTATCGCATCATTTGCGAATTTGCCGCCCAAGGCGGGACCGTCGTCATGGTTTCTTCCGAGATTGATGAAGTCCTCG
GCATGTCTGACCGCATCATGGTCATGCGTGGCGGACAATCGGTCGGCATCTACCGCAGGGCGGAAACGGACGCGCAGTCA
TTGGTGCATCTTTCGACATGA

Upstream 100 bases:

>100_bases
TCATTTGCCGAATATTGTCAAAACGACAGCTTGACTGTTGAAATCGGCGGCAGCGCGAACTGCCGCCAGTGGAGGAGATA
CATTGGAATTTCTGCTCGAT

Downstream 100 bases:

>100_bases
AGGCTGCCGGGGAGAATATCGCGTTCCGTTCGTGACCATGAAGATAGAGCAGTTGCCTATGCAGCAGACGCCGCAGGTTC
TGGAGAGGTAGAACAGTGTC

Product: ribose ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 486; Mature: 486

Protein sequence:

>486_residues
MEGLKKSFGGVAALRDGRLQLRTGSVHALCGGNGAGKSTFLKILMGIHARDGGHIRRRGKEVTYSSPAEALQAGIAIIEQ
ELSPVPHMTVAENIYLGREPLRRFGGIDFKTMNLNAQKLLDQLEFKIRANQFMMNLSVAQVQLVEIAKALSHDAEVIFMD
EPTSAIGEKEAQQLFAAIERLKASGKGIVYVSHRLSEIFQIADSYTVFRDGSYIDSGDLGGITRAELIHMIVGRELGEEY
IKTNAPTEIPGVEVSGLSAPGKITDISFTAHKGEIFGIYGLMGSGRSEIFNCLFGLEKASQGTIRLEGEPVTVRRPADAV
ALGLAFVTEDRKLTGLNLGDSVRNNICLASLPEMSPHFSMNRRAESAASREMIERFRIKVAHDTMAVSGLSGGNQQKVVL
GKWFLRKPRVLLLDEPTRGVDVGAKQEIYRIICEFAAQGGTVVMVSSEIDEVLGMSDRIMVMRGGQSVGIYRRAETDAQS
LVHLST

Sequences:

>Translated_486_residues
MEGLKKSFGGVAALRDGRLQLRTGSVHALCGGNGAGKSTFLKILMGIHARDGGHIRRRGKEVTYSSPAEALQAGIAIIEQ
ELSPVPHMTVAENIYLGREPLRRFGGIDFKTMNLNAQKLLDQLEFKIRANQFMMNLSVAQVQLVEIAKALSHDAEVIFMD
EPTSAIGEKEAQQLFAAIERLKASGKGIVYVSHRLSEIFQIADSYTVFRDGSYIDSGDLGGITRAELIHMIVGRELGEEY
IKTNAPTEIPGVEVSGLSAPGKITDISFTAHKGEIFGIYGLMGSGRSEIFNCLFGLEKASQGTIRLEGEPVTVRRPADAV
ALGLAFVTEDRKLTGLNLGDSVRNNICLASLPEMSPHFSMNRRAESAASREMIERFRIKVAHDTMAVSGLSGGNQQKVVL
GKWFLRKPRVLLLDEPTRGVDVGAKQEIYRIICEFAAQGGTVVMVSSEIDEVLGMSDRIMVMRGGQSVGIYRRAETDAQS
LVHLST
>Mature_486_residues
MEGLKKSFGGVAALRDGRLQLRTGSVHALCGGNGAGKSTFLKILMGIHARDGGHIRRRGKEVTYSSPAEALQAGIAIIEQ
ELSPVPHMTVAENIYLGREPLRRFGGIDFKTMNLNAQKLLDQLEFKIRANQFMMNLSVAQVQLVEIAKALSHDAEVIFMD
EPTSAIGEKEAQQLFAAIERLKASGKGIVYVSHRLSEIFQIADSYTVFRDGSYIDSGDLGGITRAELIHMIVGRELGEEY
IKTNAPTEIPGVEVSGLSAPGKITDISFTAHKGEIFGIYGLMGSGRSEIFNCLFGLEKASQGTIRLEGEPVTVRRPADAV
ALGLAFVTEDRKLTGLNLGDSVRNNICLASLPEMSPHFSMNRRAESAASREMIERFRIKVAHDTMAVSGLSGGNQQKVVL
GKWFLRKPRVLLLDEPTRGVDVGAKQEIYRIICEFAAQGGTVVMVSSEIDEVLGMSDRIMVMRGGQSVGIYRRAETDAQS
LVHLST

Specific function: Part of an ABC transporter complex involved in carbohydrate import. Could be involved in ribose, galactose and/or methyl galactoside import. Responsible for energy coupling to the transport system [H]

COG id: COG1129

COG function: function code G; ABC-type sugar transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI31657092, Length=205, Percent_Identity=26.3414634146341, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI9961252, Length=227, Percent_Identity=27.3127753303965, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI9961250, Length=225, Percent_Identity=27.1111111111111, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI4505771, Length=225, Percent_Identity=27.1111111111111, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI42741659, Length=254, Percent_Identity=25.9842519685039, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI9955963, Length=222, Percent_Identity=26.1261261261261, Blast_Score=66, Evalue=6e-11,
Organism=Escherichia coli, GI1790190, Length=484, Percent_Identity=45.8677685950413, Blast_Score=427, Evalue=1e-121,
Organism=Escherichia coli, GI1788472, Length=491, Percent_Identity=41.7515274949084, Blast_Score=382, Evalue=1e-107,
Organism=Escherichia coli, GI1788210, Length=485, Percent_Identity=41.0309278350515, Blast_Score=352, Evalue=2e-98,
Organism=Escherichia coli, GI1789991, Length=479, Percent_Identity=40.5010438413361, Blast_Score=342, Evalue=4e-95,
Organism=Escherichia coli, GI1790525, Length=482, Percent_Identity=39.6265560165975, Blast_Score=338, Evalue=3e-94,
Organism=Escherichia coli, GI48995001, Length=485, Percent_Identity=36.0824742268041, Blast_Score=324, Evalue=9e-90,
Organism=Escherichia coli, GI1788897, Length=471, Percent_Identity=39.4904458598726, Blast_Score=310, Evalue=1e-85,
Organism=Escherichia coli, GI1787792, Length=479, Percent_Identity=34.8643006263048, Blast_Score=267, Evalue=9e-73,
Organism=Escherichia coli, GI48994943, Length=497, Percent_Identity=22.5352112676056, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI145693107, Length=532, Percent_Identity=25.187969924812, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788761, Length=217, Percent_Identity=30.4147465437788, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI1787089, Length=231, Percent_Identity=26.8398268398268, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1788506, Length=497, Percent_Identity=24.748490945674, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1788450, Length=243, Percent_Identity=32.5102880658436, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1786345, Length=225, Percent_Identity=29.7777777777778, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787712, Length=272, Percent_Identity=25, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081791, Length=209, Percent_Identity=27.7511961722488, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1790467, Length=218, Percent_Identity=26.605504587156, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1786319, Length=223, Percent_Identity=26.0089686098655, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI1787370, Length=222, Percent_Identity=28.3783783783784, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787105, Length=208, Percent_Identity=28.8461538461538, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1786872, Length=219, Percent_Identity=26.9406392694064, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI87081709, Length=211, Percent_Identity=27.4881516587678, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI87082268, Length=213, Percent_Identity=27.6995305164319, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1787029, Length=221, Percent_Identity=27.6018099547511, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1786398, Length=212, Percent_Identity=25.4716981132075, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1789032, Length=208, Percent_Identity=26.9230769230769, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1789672, Length=218, Percent_Identity=23.8532110091743, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1786698, Length=202, Percent_Identity=26.2376237623762, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1789864, Length=230, Percent_Identity=25.2173913043478, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1790739, Length=216, Percent_Identity=26.3888888888889, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1789593, Length=239, Percent_Identity=24.2677824267782, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788225, Length=224, Percent_Identity=26.7857142857143, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI48994997, Length=220, Percent_Identity=26.3636363636364, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1789891, Length=210, Percent_Identity=27.1428571428571, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787143, Length=217, Percent_Identity=29.9539170506912, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1789873, Length=207, Percent_Identity=25.6038647342995, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI48994883, Length=220, Percent_Identity=25, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787500, Length=209, Percent_Identity=27.7511961722488, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786654, Length=212, Percent_Identity=29.2452830188679, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1787759, Length=234, Percent_Identity=27.7777777777778, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1786563, Length=210, Percent_Identity=25.7142857142857, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI87081782, Length=200, Percent_Identity=28.5, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1788165, Length=204, Percent_Identity=26.9607843137255, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI87081834, Length=211, Percent_Identity=27.0142180094787, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786803, Length=233, Percent_Identity=24.8927038626609, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786253, Length=186, Percent_Identity=26.8817204301075, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790544, Length=233, Percent_Identity=28.3261802575107, Blast_Score=62, Evalue=9e-11,
Organism=Escherichia coli, GI1788644, Length=215, Percent_Identity=28.3720930232558, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=205, Percent_Identity=25.3658536585366, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17541710, Length=210, Percent_Identity=29.5238095238095, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193202349, Length=210, Percent_Identity=29.0476190476191, Blast_Score=69, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17567265, Length=211, Percent_Identity=28.436018957346, Blast_Score=68, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI71983510, Length=209, Percent_Identity=26.3157894736842, Blast_Score=67, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=209, Percent_Identity=26.3157894736842, Blast_Score=67, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=209, Percent_Identity=26.3157894736842, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24666092, Length=260, Percent_Identity=25.7692307692308, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI23397593, Length=235, Percent_Identity=27.6595744680851, Blast_Score=69, Evalue=8e-12,
Organism=Drosophila melanogaster, GI85726357, Length=246, Percent_Identity=28.8617886178862, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17136592, Length=223, Percent_Identity=23.3183856502242, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24643674, Length=208, Percent_Identity=22.1153846153846, Blast_Score=67, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015862
- InterPro:   IPR015861
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: =3.6.3.17 [H]

Molecular weight: Translated: 52909; Mature: 52909

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGLKKSFGGVAALRDGRLQLRTGSVHALCGGNGAGKSTFLKILMGIHARDGGHIRRRGK
CCCHHHHHCCEEEEECCEEEEEECCEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHCCC
EVTYSSPAEALQAGIAIIEQELSPVPHMTVAENIYLGREPLRRFGGIDFKTMNLNAQKLL
CCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHEECCHHHHHHHCCCCEEEECCCHHHHH
DQLEFKIRANQFMMNLSVAQVQLVEIAKALSHDAEVIFMDEPTSAIGEKEAQQLFAAIER
HHHHHHHHHHHHEEEHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHCHHHHHHHHHHHHH
LKASGKGIVYVSHRLSEIFQIADSYTVFRDGSYIDSGDLGGITRAELIHMIVGRELGEEY
HHCCCCEEEEEHHHHHHHHHHHHCEEEEECCCEECCCCCCCHHHHHHHHHHHHHHHHHHH
IKTNAPTEIPGVEVSGLSAPGKITDISFTAHKGEIFGIYGLMGSGRSEIFNCLFGLEKAS
HHCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHCCCC
QGTIRLEGEPVTVRRPADAVALGLAFVTEDRKLTGLNLGDSVRNNICLASLPEMSPHFSM
CCEEEECCCEEEEECCCHHHHHEEEEEECCCEEECCCCCHHHHCCEEEEECCCCCCCCCC
NRRAESAASREMIERFRIKVAHDTMAVSGLSGGNQQKVVLGKWFLRKPRVLLLDEPTRGV
CHHHHHHHHHHHHHHHHEEEEECEEEEECCCCCCCCEEEEEHHHHCCCCEEEEECCCCCC
DVGAKQEIYRIICEFAAQGGTVVMVSSEIDEVLGMSDRIMVMRGGQSVGIYRRAETDAQS
CCCCHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCCCEEEEEECCCCEEEEEECCCCHHH
LVHLST
HEEECC
>Mature Secondary Structure
MEGLKKSFGGVAALRDGRLQLRTGSVHALCGGNGAGKSTFLKILMGIHARDGGHIRRRGK
CCCHHHHHCCEEEEECCEEEEEECCEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHCCC
EVTYSSPAEALQAGIAIIEQELSPVPHMTVAENIYLGREPLRRFGGIDFKTMNLNAQKLL
CCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHEECCHHHHHHHCCCCEEEECCCHHHHH
DQLEFKIRANQFMMNLSVAQVQLVEIAKALSHDAEVIFMDEPTSAIGEKEAQQLFAAIER
HHHHHHHHHHHHEEEHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHCHHHHHHHHHHHHH
LKASGKGIVYVSHRLSEIFQIADSYTVFRDGSYIDSGDLGGITRAELIHMIVGRELGEEY
HHCCCCEEEEEHHHHHHHHHHHHCEEEEECCCEECCCCCCCHHHHHHHHHHHHHHHHHHH
IKTNAPTEIPGVEVSGLSAPGKITDISFTAHKGEIFGIYGLMGSGRSEIFNCLFGLEKAS
HHCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHCCCC
QGTIRLEGEPVTVRRPADAVALGLAFVTEDRKLTGLNLGDSVRNNICLASLPEMSPHFSM
CCEEEECCCEEEEECCCHHHHHEEEEEECCCEEECCCCCHHHHCCEEEEECCCCCCCCCC
NRRAESAASREMIERFRIKVAHDTMAVSGLSGGNQQKVVLGKWFLRKPRVLLLDEPTRGV
CHHHHHHHHHHHHHHHHEEEEECEEEEECCCCCCCCEEEEEHHHHCCCCEEEEECCCCCC
DVGAKQEIYRIICEFAAQGGTVVMVSSEIDEVLGMSDRIMVMRGGQSVGIYRRAETDAQS
CCCCHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCCCEEEEEECCCCEEEEEECCCCHHH
LVHLST
HEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194 [H]