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The map label for this gene is rbsC-2 [H]

Identifier: 23502492

GI number: 23502492

Start: 1578918

End: 1579922

Strand: Reverse

Name: rbsC-2 [H]

Synonym: BR1631

Alternate gene names: 23502492

Gene position: 1579922-1578918 (Counterclockwise)

Preceding gene: 23502493

Following gene: 23502491

Centisome position: 74.96

GC content: 57.31

Gene sequence:

>1005_bases
GTGTCCACCACAGAAAACAATTCATCGACGAGCTGGTTTGGCTCCGAACGCCGCAGGCTGGTGATCCAGGAATACGGCAT
ATTCATCGCCTTCCTGCTTTTGGCCACGATTCTCTCGTTCTCCAACGAATATTTCCTCACCGCGGGCAATATTTCCAACG
TCCTGTTGCAGACCTCGATCAACGGCATTCTCGCCATCGGCATGACGTTCGTTATTCTGACGCGCGGTATCGACCTTTCC
GTTGGCTCCGTGGTTGCCTTGGCTGGCATTGTGAGCGCCAGCTTTGCAACCACATCTGCAATGGCGGGTATTGCGGGCGC
ACCATATTCACCGTTTATAGCCATTTGCGTCGGCCTGCTGGTGGGGATAGGTTGCGGCGCACTGGTCGGTACGATTGTCT
CGCGCTTTGCGGTTCCAGCCTTCGTGGCAACATTGGGCATGCTTTCCGCAGCGCGCGGCCTGACGCTCATCTATGGCGGC
GGCAAGCCTGTGCCTGCGCTTGTTCCGGATTTCCGGTGGATTGGAACCGGCAATATACTGGGTGTTCCGGTACCGGTCAT
TCTGCTTGCAATCGTGTTCCTGGTATCGTGGTGGATCCTCAACCGATCGAGGTTTGGCCGCTATATCTATGCGGTTGGCG
GCAATCCTCATGCTGCGAACACCTCCGGCATCAATATCTCCAGGGTGCGTTTTTCGGTTTATGTCATTTCAGGCGGGTTG
GCGGGCCTTGCCGGGATGATTCTGTCTGCCCGCACCGGGTCTGCCTTGCCGCAAGCGGGTATCAGTTATGAACTGGACGC
CATCGCAGCGGTCGTCATTGGCGGCACCAGCCTGTCTGGTGGCATCGGTCGCATCACCGGAACCCTTATCGGCGCGCTCA
TCATTGGCGTCATGAACAACGGTCTCGATCTGATGGGCATCCAGTCCTACTACCAGCAGGTTCTCAAGGGTGCGCTGATC
GTGGGAGCGGTCATGCTCGACCAGAAACGCAGTCAGGGAGGCTAG

Upstream 100 bases:

>100_bases
CATGAAGGCTGCCGGGGAGAATATCGCGTTCCGTTCGTGACCATGAAGATAGAGCAGTTGCCTATGCAGCAGACGCCGCA
GGTTCTGGAGAGGTAGAACA

Downstream 100 bases:

>100_bases
AGCGATTCCGGTTAAACGGGTCGCTGGAACCGCTCTAAGTATTTGTTTCGTCGCATTATCCTACGCAAAACCGCTTTGCA
CTTTTGCCGGAAATGCTCTC

Product: ribose ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MSTTENNSSTSWFGSERRRLVIQEYGIFIAFLLLATILSFSNEYFLTAGNISNVLLQTSINGILAIGMTFVILTRGIDLS
VGSVVALAGIVSASFATTSAMAGIAGAPYSPFIAICVGLLVGIGCGALVGTIVSRFAVPAFVATLGMLSAARGLTLIYGG
GKPVPALVPDFRWIGTGNILGVPVPVILLAIVFLVSWWILNRSRFGRYIYAVGGNPHAANTSGINISRVRFSVYVISGGL
AGLAGMILSARTGSALPQAGISYELDAIAAVVIGGTSLSGGIGRITGTLIGALIIGVMNNGLDLMGIQSYYQQVLKGALI
VGAVMLDQKRSQGG

Sequences:

>Translated_334_residues
MSTTENNSSTSWFGSERRRLVIQEYGIFIAFLLLATILSFSNEYFLTAGNISNVLLQTSINGILAIGMTFVILTRGIDLS
VGSVVALAGIVSASFATTSAMAGIAGAPYSPFIAICVGLLVGIGCGALVGTIVSRFAVPAFVATLGMLSAARGLTLIYGG
GKPVPALVPDFRWIGTGNILGVPVPVILLAIVFLVSWWILNRSRFGRYIYAVGGNPHAANTSGINISRVRFSVYVISGGL
AGLAGMILSARTGSALPQAGISYELDAIAAVVIGGTSLSGGIGRITGTLIGALIIGVMNNGLDLMGIQSYYQQVLKGALI
VGAVMLDQKRSQGG
>Mature_333_residues
STTENNSSTSWFGSERRRLVIQEYGIFIAFLLLATILSFSNEYFLTAGNISNVLLQTSINGILAIGMTFVILTRGIDLSV
GSVVALAGIVSASFATTSAMAGIAGAPYSPFIAICVGLLVGIGCGALVGTIVSRFAVPAFVATLGMLSAARGLTLIYGGG
KPVPALVPDFRWIGTGNILGVPVPVILLAIVFLVSWWILNRSRFGRYIYAVGGNPHAANTSGINISRVRFSVYVISGGLA
GLAGMILSARTGSALPQAGISYELDAIAAVVIGGTSLSGGIGRITGTLIGALIIGVMNNGLDLMGIQSYYQQVLKGALIV
GAVMLDQKRSQGG

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=333, Percent_Identity=47.7477477477478, Blast_Score=261, Evalue=4e-71,
Organism=Escherichia coli, GI1790524, Length=332, Percent_Identity=40.0602409638554, Blast_Score=205, Evalue=3e-54,
Organism=Escherichia coli, GI1788896, Length=332, Percent_Identity=36.7469879518072, Blast_Score=178, Evalue=5e-46,
Organism=Escherichia coli, GI1789992, Length=379, Percent_Identity=33.7730870712401, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI145693152, Length=332, Percent_Identity=32.2289156626506, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI87082395, Length=276, Percent_Identity=35.8695652173913, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1788471, Length=325, Percent_Identity=35.3846153846154, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI145693214, Length=283, Percent_Identity=37.1024734982332, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI1787793, Length=288, Percent_Identity=31.25, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787794, Length=264, Percent_Identity=30.3030303030303, Blast_Score=99, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34440; Mature: 34309

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTTENNSSTSWFGSERRRLVIQEYGIFIAFLLLATILSFSNEYFLTAGNISNVLLQTSI
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH
NGILAIGMTFVILTRGIDLSVGSVVALAGIVSASFATTSAMAGIAGAPYSPFIAICVGLL
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
VGIGCGALVGTIVSRFAVPAFVATLGMLSAARGLTLIYGGGKPVPALVPDFRWIGTGNIL
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCEEECCCCCC
GVPVPVILLAIVFLVSWWILNRSRFGRYIYAVGGNPHAANTSGINISRVRFSVYVISGGL
CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEEEEEEEEECCH
AGLAGMILSARTGSALPQAGISYELDAIAAVVIGGTSLSGGIGRITGTLIGALIIGVMNN
HHHHHHHHHCCCCCCCCCCCCCEEHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCC
GLDLMGIQSYYQQVLKGALIVGAVMLDQKRSQGG
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
STTENNSSTSWFGSERRRLVIQEYGIFIAFLLLATILSFSNEYFLTAGNISNVLLQTSI
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH
NGILAIGMTFVILTRGIDLSVGSVVALAGIVSASFATTSAMAGIAGAPYSPFIAICVGLL
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
VGIGCGALVGTIVSRFAVPAFVATLGMLSAARGLTLIYGGGKPVPALVPDFRWIGTGNIL
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCEEECCCCCC
GVPVPVILLAIVFLVSWWILNRSRFGRYIYAVGGNPHAANTSGINISRVRFSVYVISGGL
CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEEEEEEEEECCH
AGLAGMILSARTGSALPQAGISYELDAIAAVVIGGTSLSGGIGRITGTLIGALIIGVMNN
HHHHHHHHHCCCCCCCCCCCCCEEHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCC
GLDLMGIQSYYQQVLKGALIVGAVMLDQKRSQGG
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]