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The map label for this gene is lgtB [H]

Identifier: 23502468

GI number: 23502468

Start: 1548406

End: 1549188

Strand: Reverse

Name: lgtB [H]

Synonym: BR1605

Alternate gene names: 23502468

Gene position: 1549188-1548406 (Counterclockwise)

Preceding gene: 23502470

Following gene: 23502466

Centisome position: 73.5

GC content: 50.45

Gene sequence:

>783_bases
ATGAAGTGTTATCTTATTAATCTCGACAAGAGCCGGGATCGCCTCGAATTCATGGCGTCTCAGTTTGAGCGCCTCGGCGC
ACAATTCAAGCGTGTGGAAGCCGTAAATGGACGAGCCATGTCGCCGCTTGAACTGGCTTCCTTTACTCAAATAAGTAAAG
AATGGCCCGCTCCTTTGTCGCCTGCCGAAATTGGCTGTTTTCTTTCTCATCGCAAATGCCTTGAAAAGATTGCTGCCGGC
GAAGATGCCTATGCGGCAGTCTTTGAAGATGACATTCGATTGAGCCAGGGTTCCTCGCGGTTTTTGGCTTCAGATCACTG
GATACCCAAGCAAGCGGATATCGTCAAAATCGACGCTTACGGACATGAGGTATTGATTTCCAACCCTGTTAAAAATGAAG
GCCCGTATTCGATTTCCCGGCTGCGCTCGCGACACTTGCAGACGGGCGGATACGTTGTTTCGCGCGAAGCAGCTCGCAAG
CTCCTTCCATTGATGGAAAAAGCCTCAGCGCCGGTAGACCATTTCTTGTTCGATCCCAATGATGGGCCATTCAACGATTT
TGAAATTTATCAGATTTCCCCTGCAATTTGCCGCCAGTCGGGAATGGAAAGCACAATCGGTCAGAATCGGCGCCCCAAAC
AGCGCCCCTCTCTTTTGGGCTTGGTCTGGCGTGAAGCTAAAAGATTGGTTATGCGAACCCGTCGCAATCTAAAAGGTTTC
ATAGCCAACGTCACCAAAACAGGCCGGTGGGGGCCCATTCCATTTGATCGGGATATTGCGTAG

Upstream 100 bases:

>100_bases
GGCCCAGGCGATGACAAAGCGCGCACACTTTATACTGCTGCCATTAATTGACTAGAATTCAAAGGCCTCCTAATGAATGA
CCATTCCAAGGGGGGGCTTT

Downstream 100 bases:

>100_bases
TTCACCCGCAATTAGTCATAGCCAATTTTAACAATAGATGTTGACCCTGGCGAAGGCGCATCTTCTGCGTAATATGCTAT
GAATCTTCTGAACAGATTAG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MKCYLINLDKSRDRLEFMASQFERLGAQFKRVEAVNGRAMSPLELASFTQISKEWPAPLSPAEIGCFLSHRKCLEKIAAG
EDAYAAVFEDDIRLSQGSSRFLASDHWIPKQADIVKIDAYGHEVLISNPVKNEGPYSISRLRSRHLQTGGYVVSREAARK
LLPLMEKASAPVDHFLFDPNDGPFNDFEIYQISPAICRQSGMESTIGQNRRPKQRPSLLGLVWREAKRLVMRTRRNLKGF
IANVTKTGRWGPIPFDRDIA

Sequences:

>Translated_260_residues
MKCYLINLDKSRDRLEFMASQFERLGAQFKRVEAVNGRAMSPLELASFTQISKEWPAPLSPAEIGCFLSHRKCLEKIAAG
EDAYAAVFEDDIRLSQGSSRFLASDHWIPKQADIVKIDAYGHEVLISNPVKNEGPYSISRLRSRHLQTGGYVVSREAARK
LLPLMEKASAPVDHFLFDPNDGPFNDFEIYQISPAICRQSGMESTIGQNRRPKQRPSLLGLVWREAKRLVMRTRRNLKGF
IANVTKTGRWGPIPFDRDIA
>Mature_260_residues
MKCYLINLDKSRDRLEFMASQFERLGAQFKRVEAVNGRAMSPLELASFTQISKEWPAPLSPAEIGCFLSHRKCLEKIAAG
EDAYAAVFEDDIRLSQGSSRFLASDHWIPKQADIVKIDAYGHEVLISNPVKNEGPYSISRLRSRHLQTGGYVVSREAARK
LLPLMEKASAPVDHFLFDPNDGPFNDFEIYQISPAICRQSGMESTIGQNRRPKQRPSLLGLVWREAKRLVMRTRRNLKGF
IANVTKTGRWGPIPFDRDIA

Specific function: Adds the second galactose to the lacto-N-tetraose chain in lipooligosaccharide (LOS) [H]

COG id: COG3306

COG function: function code M; Glycosyltransferase involved in LPS biosynthesis

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 25 family [H]

Homologues:

Organism=Caenorhabditis elegans, GI71983853, Length=201, Percent_Identity=31.8407960199005, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002654 [H]

Pfam domain/function: PF01755 Glyco_transf_25 [H]

EC number: NA

Molecular weight: Translated: 29450; Mature: 29450

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKCYLINLDKSRDRLEFMASQFERLGAQFKRVEAVNGRAMSPLELASFTQISKEWPAPLS
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCC
PAEIGCFLSHRKCLEKIAAGEDAYAAVFEDDIRLSQGSSRFLASDHWIPKQADIVKIDAY
HHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCHHCCCCCCCEEECCCCCCCCCCEEEEECC
GHEVLISNPVKNEGPYSISRLRSRHLQTGGYVVSREAARKLLPLMEKASAPVDHFLFDPN
CCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCHHHEEECCC
DGPFNDFEIYQISPAICRQSGMESTIGQNRRPKQRPSLLGLVWREAKRLVMRTRRNLKGF
CCCCCCEEEEEECHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IANVTKTGRWGPIPFDRDIA
HHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKCYLINLDKSRDRLEFMASQFERLGAQFKRVEAVNGRAMSPLELASFTQISKEWPAPLS
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCC
PAEIGCFLSHRKCLEKIAAGEDAYAAVFEDDIRLSQGSSRFLASDHWIPKQADIVKIDAY
HHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCHHCCCCCCCEEECCCCCCCCCCEEEEECC
GHEVLISNPVKNEGPYSISRLRSRHLQTGGYVVSREAARKLLPLMEKASAPVDHFLFDPN
CCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCHHHEEECCC
DGPFNDFEIYQISPAICRQSGMESTIGQNRRPKQRPSLLGLVWREAKRLVMRTRRNLKGF
CCCCCCEEEEEECHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IANVTKTGRWGPIPFDRDIA
HHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7964493 [H]