| Definition | Brucella suis 1330 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_004310 |
| Length | 2,107,794 |
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The map label for this gene is yjjK [C]
Identifier: 23502325
GI number: 23502325
Start: 1413869
End: 1415518
Strand: Reverse
Name: yjjK [C]
Synonym: BR1456
Alternate gene names: 23502325
Gene position: 1415518-1413869 (Counterclockwise)
Preceding gene: 23502326
Following gene: 23502324
Centisome position: 67.16
GC content: 56.18
Gene sequence:
>1650_bases ATGGCACGCCAGTTCATTTATCATATGTCCGGCCTCAACAAGGCCTATGGCAACAAGAAGATTCTGGAGAATATCCATCT CTCCTTCTATCCCGATGCCAAGATCGGCATTCTTGGGCCGAACGGTGCCGGTAAATCCACCGTTCTCAAGATCATGGCCG GTCTCGACAAGGAATATACCGGCGAGGCGTGGCTCGCAGAAGGTGCGACCTGCGGTTATCTCCCGCAGGAGCCGGAGCTT GATCCTTCCAAGGATGTGCTCGGCAATGTGATGGAAGGTGTTGCCGACAAGAAGGCGATCATCGACCGCTACAACGAGCT GATGATGAATTATTCCGACGAAACGGCGGATGAAGGCGCAAAACTTCAGGATATCATCGACAGCCAGAACCTCTGGGATC TGGAAAGCCAGGTGGAAATGGCGATGGAAGCGCTACGCTGCCCGCCGGGCGATGCGGATGTCACCAAGCTTTCGGGCGGT GAAAAGCGCCGCGTGGCGCTGTGCAAGCTTCTGCTTTCCAAGCCTGACCTGCTGCTTCTCGATGAGCCCACCAACCATTT GGATGCGGAAACCACAGCCTGGCTCGAAAAGCACCTGCGTGAATATCCCGGTTCGGTGCTCATCATCACCCATGACCGTT ACTTCCTCGACAATGTGACGGGCTGGATTCTCGAACTCGACCGTGGCCGCGGCATTCCCTATGAAGGCAATTATTCGGCC TATCTGGAAGCCAAGGCCAAGCGTATGGCGCAGGAAGGCCGCGAGGAAGCCGCGCGCGAAAAGGCGCTGTCGCGTGAACG TGAGTGGATTTCCGCCAGCCCGAAGGCGCGTCAGGCCAAGTCCAAGGCTCGTATCAAGGCATATGACGAATTGGTTAAAA GTGCTGAAGAACGCCGCCCCGGCGATGCGCAGATCATCATTCCGGTCGGCGAGCGCCTGGGCCAGGTCGTCATCGAGGTT GAGAATCTGTCGAAAGGCTTTGGTGACCGCCTTTTGATCGATGATCTGAGCTTCAAGCTGCCTGCGGGTGGTATTGTCGG CGTTATCGGCCCGAACGGTGCCGGTAAATCGACGCTCTTCAAGATGCTGACGGGACAGGAGCAGCCGGATAAAGGTTCGG TTCGCATTGGCGACACGGTTCATCTTTCCTATGTGGATCAGAGCCGCGATGCACTCGACCCAAACAAGACCGTGTGGGAA GAAATTTCCGGCGGCAACGATGTCATCAAGCTCGGCAAATTCGAGATGAACTCCAGAGCCTATTGCGGTGCGTTCAACTT CAAGGGCGGTGATCAGCAGCAGAAGGTGGGCAACCTGTCGGGCGGCCAGCGCAATCGTGTTCACCTTGCCAAGATGCTGA AGTCCGGCGGCAATGTGCTTCTCCTCGACGAACCGACGAACGATCTCGATACTGAAACGCTGGGCGCGCTGGAAGATGCG CTGGAAAATTTTGCGGGCTGCGCTGTTATCATCAGCCATGATCGCATGTTCCTCGACCGTCTGGCGACGCATATTCTTGC CTTTGAAGGCGACAGCCATGTCGAATGGTTTGAAGGCAATTTCGAGGACTATGAAGCTGACAAAATCCGCCGTCTTGGGC CGGATAGCGTCAACCCGAAACGGGTAACTTACAAGCCGCTGACGCGGTGA
Upstream 100 bases:
>100_bases TCTGCGCCGCATTTGGCCTAAATACGCCACAGAAATTTCCTCGCGGTATCGGCATGGATCGGCCGGCCGCGTTTTCCAAC CTGCGGAGACGACGCGCTTT
Downstream 100 bases:
>100_bases TGACTTTCAGGGCCGGTGCATCGCACCGGCCTTTTTATTTCAGGCCCTTTTCACGGGATGAAAGGAAAGATGATGAAAGA CTGGTCTGCAAAACAGTATC
Product: putative ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 549; Mature: 548
Protein sequence:
>549_residues MARQFIYHMSGLNKAYGNKKILENIHLSFYPDAKIGILGPNGAGKSTVLKIMAGLDKEYTGEAWLAEGATCGYLPQEPEL DPSKDVLGNVMEGVADKKAIIDRYNELMMNYSDETADEGAKLQDIIDSQNLWDLESQVEMAMEALRCPPGDADVTKLSGG EKRRVALCKLLLSKPDLLLLDEPTNHLDAETTAWLEKHLREYPGSVLIITHDRYFLDNVTGWILELDRGRGIPYEGNYSA YLEAKAKRMAQEGREEAAREKALSREREWISASPKARQAKSKARIKAYDELVKSAEERRPGDAQIIIPVGERLGQVVIEV ENLSKGFGDRLLIDDLSFKLPAGGIVGVIGPNGAGKSTLFKMLTGQEQPDKGSVRIGDTVHLSYVDQSRDALDPNKTVWE EISGGNDVIKLGKFEMNSRAYCGAFNFKGGDQQQKVGNLSGGQRNRVHLAKMLKSGGNVLLLDEPTNDLDTETLGALEDA LENFAGCAVIISHDRMFLDRLATHILAFEGDSHVEWFEGNFEDYEADKIRRLGPDSVNPKRVTYKPLTR
Sequences:
>Translated_549_residues MARQFIYHMSGLNKAYGNKKILENIHLSFYPDAKIGILGPNGAGKSTVLKIMAGLDKEYTGEAWLAEGATCGYLPQEPEL DPSKDVLGNVMEGVADKKAIIDRYNELMMNYSDETADEGAKLQDIIDSQNLWDLESQVEMAMEALRCPPGDADVTKLSGG EKRRVALCKLLLSKPDLLLLDEPTNHLDAETTAWLEKHLREYPGSVLIITHDRYFLDNVTGWILELDRGRGIPYEGNYSA YLEAKAKRMAQEGREEAAREKALSREREWISASPKARQAKSKARIKAYDELVKSAEERRPGDAQIIIPVGERLGQVVIEV ENLSKGFGDRLLIDDLSFKLPAGGIVGVIGPNGAGKSTLFKMLTGQEQPDKGSVRIGDTVHLSYVDQSRDALDPNKTVWE EISGGNDVIKLGKFEMNSRAYCGAFNFKGGDQQQKVGNLSGGQRNRVHLAKMLKSGGNVLLLDEPTNDLDTETLGALEDA LENFAGCAVIISHDRMFLDRLATHILAFEGDSHVEWFEGNFEDYEADKIRRLGPDSVNPKRVTYKPLTR >Mature_548_residues ARQFIYHMSGLNKAYGNKKILENIHLSFYPDAKIGILGPNGAGKSTVLKIMAGLDKEYTGEAWLAEGATCGYLPQEPELD PSKDVLGNVMEGVADKKAIIDRYNELMMNYSDETADEGAKLQDIIDSQNLWDLESQVEMAMEALRCPPGDADVTKLSGGE KRRVALCKLLLSKPDLLLLDEPTNHLDAETTAWLEKHLREYPGSVLIITHDRYFLDNVTGWILELDRGRGIPYEGNYSAY LEAKAKRMAQEGREEAAREKALSREREWISASPKARQAKSKARIKAYDELVKSAEERRPGDAQIIIPVGERLGQVVIEVE NLSKGFGDRLLIDDLSFKLPAGGIVGVIGPNGAGKSTLFKMLTGQEQPDKGSVRIGDTVHLSYVDQSRDALDPNKTVWEE ISGGNDVIKLGKFEMNSRAYCGAFNFKGGDQQQKVGNLSGGQRNRVHLAKMLKSGGNVLLLDEPTNDLDTETLGALEDAL ENFAGCAVIISHDRMFLDRLATHILAFEGDSHVEWFEGNFEDYEADKIRRLGPDSVNPKRVTYKPLTR
Specific function: Probably part of an ABC transporter complex. Probably responsible for energy coupling to the transport system [H]
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=544, Percent_Identity=27.7573529411765, Blast_Score=194, Evalue=2e-49, Organism=Homo sapiens, GI10947137, Length=523, Percent_Identity=28.6806883365201, Blast_Score=174, Evalue=2e-43, Organism=Homo sapiens, GI27881506, Length=523, Percent_Identity=28.6806883365201, Blast_Score=174, Evalue=2e-43, Organism=Homo sapiens, GI69354671, Length=557, Percent_Identity=27.6481149012567, Blast_Score=164, Evalue=2e-40, Organism=Homo sapiens, GI10947135, Length=565, Percent_Identity=27.6106194690265, Blast_Score=164, Evalue=2e-40, Organism=Escherichia coli, GI2367384, Length=553, Percent_Identity=56.9620253164557, Blast_Score=642, Evalue=0.0, Organism=Escherichia coli, GI1787182, Length=527, Percent_Identity=34.7248576850095, Blast_Score=310, Evalue=2e-85, Organism=Escherichia coli, GI1789751, Length=526, Percent_Identity=30.9885931558935, Blast_Score=244, Evalue=8e-66, Organism=Escherichia coli, GI1787041, Length=527, Percent_Identity=32.6375711574953, Blast_Score=237, Evalue=2e-63, Organism=Escherichia coli, GI48994943, Length=492, Percent_Identity=24.1869918699187, Blast_Score=111, Evalue=9e-26, Organism=Escherichia coli, GI87081782, Length=538, Percent_Identity=24.7211895910781, Blast_Score=110, Evalue=2e-25, Organism=Escherichia coli, GI1790190, Length=533, Percent_Identity=24.202626641651, Blast_Score=96, Evalue=6e-21, Organism=Escherichia coli, GI87081791, Length=195, Percent_Identity=35.8974358974359, Blast_Score=93, Evalue=4e-20, Organism=Escherichia coli, GI1788225, Length=242, Percent_Identity=28.5123966942149, Blast_Score=92, Evalue=8e-20, Organism=Escherichia coli, GI87081709, Length=193, Percent_Identity=30.0518134715026, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI1788761, Length=252, Percent_Identity=28.968253968254, Blast_Score=83, Evalue=4e-17, Organism=Escherichia coli, GI1788165, Length=183, Percent_Identity=31.1475409836066, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1787758, Length=188, Percent_Identity=31.9148936170213, Blast_Score=76, Evalue=6e-15, Organism=Escherichia coli, GI1787029, Length=258, Percent_Identity=26.7441860465116, Blast_Score=75, Evalue=8e-15, Organism=Escherichia coli, GI1786563, Length=219, Percent_Identity=30.5936073059361, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI1788450, Length=207, Percent_Identity=28.5024154589372, Blast_Score=73, Evalue=4e-14, Organism=Escherichia coli, GI1786398, Length=208, Percent_Identity=30.7692307692308, Blast_Score=73, Evalue=5e-14, Organism=Escherichia coli, GI1789593, Length=216, Percent_Identity=27.3148148148148, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI48995001, Length=204, Percent_Identity=29.4117647058824, Blast_Score=72, Evalue=9e-14, Organism=Escherichia coli, GI1787712, Length=191, Percent_Identity=27.7486910994764, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1790467, Length=313, Percent_Identity=25.2396166134185, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1786345, Length=215, Percent_Identity=27.906976744186, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI1786803, Length=211, Percent_Identity=28.9099526066351, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI1787164, Length=196, Percent_Identity=30.1020408163265, Blast_Score=70, Evalue=5e-13, Organism=Escherichia coli, GI1789991, Length=218, Percent_Identity=28.8990825688073, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1789891, Length=233, Percent_Identity=24.8927038626609, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1786975, Length=336, Percent_Identity=27.6785714285714, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI87082267, Length=207, Percent_Identity=25.1207729468599, Blast_Score=67, Evalue=4e-12, Organism=Escherichia coli, GI1789873, Length=223, Percent_Identity=25.5605381165919, Blast_Score=66, Evalue=5e-12, Organism=Escherichia coli, GI87081834, Length=200, Percent_Identity=28.5, Blast_Score=66, Evalue=7e-12, Organism=Escherichia coli, GI1787370, Length=192, Percent_Identity=27.0833333333333, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1788644, Length=218, Percent_Identity=27.0642201834862, Blast_Score=63, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17559834, Length=552, Percent_Identity=27.7173913043478, Blast_Score=202, Evalue=3e-52, Organism=Caenorhabditis elegans, GI17553372, Length=548, Percent_Identity=28.6496350364964, Blast_Score=197, Evalue=9e-51, Organism=Caenorhabditis elegans, GI17555318, Length=536, Percent_Identity=26.3059701492537, Blast_Score=170, Evalue=2e-42, Organism=Caenorhabditis elegans, GI115534520, Length=257, Percent_Identity=27.2373540856031, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI212646699, Length=197, Percent_Identity=26.3959390862944, Blast_Score=69, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17510237, Length=195, Percent_Identity=25.6410256410256, Blast_Score=69, Evalue=9e-12, Organism=Caenorhabditis elegans, GI193208177, Length=224, Percent_Identity=29.4642857142857, Blast_Score=68, Evalue=1e-11, Organism=Caenorhabditis elegans, GI25146777, Length=175, Percent_Identity=30.2857142857143, Blast_Score=66, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17542146, Length=191, Percent_Identity=24.6073298429319, Blast_Score=66, Evalue=6e-11, Organism=Caenorhabditis elegans, GI193211017, Length=204, Percent_Identity=27.9411764705882, Blast_Score=65, Evalue=7e-11, Organism=Caenorhabditis elegans, GI193211015, Length=204, Percent_Identity=27.9411764705882, Blast_Score=65, Evalue=7e-11, Organism=Caenorhabditis elegans, GI71996809, Length=204, Percent_Identity=27.9411764705882, Blast_Score=65, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6320874, Length=531, Percent_Identity=29.3785310734463, Blast_Score=196, Evalue=1e-50, Organism=Saccharomyces cerevisiae, GI6321121, Length=538, Percent_Identity=28.6245353159851, Blast_Score=189, Evalue=1e-48, Organism=Saccharomyces cerevisiae, GI6323278, Length=385, Percent_Identity=29.0909090909091, Blast_Score=125, Evalue=2e-29, Organism=Saccharomyces cerevisiae, GI6324314, Length=379, Percent_Identity=27.4406332453826, Blast_Score=112, Evalue=2e-25, Organism=Saccharomyces cerevisiae, GI6325030, Length=382, Percent_Identity=27.2251308900524, Blast_Score=111, Evalue=3e-25, Organism=Saccharomyces cerevisiae, GI6324498, Length=218, Percent_Identity=26.605504587156, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24666836, Length=560, Percent_Identity=28.0357142857143, Blast_Score=199, Evalue=4e-51, Organism=Drosophila melanogaster, GI24641342, Length=586, Percent_Identity=27.8156996587031, Blast_Score=195, Evalue=7e-50, Organism=Drosophila melanogaster, GI24642252, Length=546, Percent_Identity=27.6556776556777, Blast_Score=194, Evalue=1e-49, Organism=Drosophila melanogaster, GI18859989, Length=546, Percent_Identity=27.6556776556777, Blast_Score=194, Evalue=1e-49, Organism=Drosophila melanogaster, GI24648314, Length=175, Percent_Identity=30.2857142857143, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI116007184, Length=176, Percent_Identity=30.1136363636364, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI221500365, Length=141, Percent_Identity=34.0425531914894, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI21357907, Length=213, Percent_Identity=30.0469483568075, Blast_Score=69, Evalue=7e-12, Organism=Drosophila melanogaster, GI24666092, Length=191, Percent_Identity=28.7958115183246, Blast_Score=67, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022374 - InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR007406 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 60846; Mature: 60714
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARQFIYHMSGLNKAYGNKKILENIHLSFYPDAKIGILGPNGAGKSTVLKIMAGLDKEYT CCCHHHHHHHCCHHHHCCHHHHHHCCEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCC GEAWLAEGATCGYLPQEPELDPSKDVLGNVMEGVADKKAIIDRYNELMMNYSDETADEGA CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC KLQDIIDSQNLWDLESQVEMAMEALRCPPGDADVTKLSGGEKRRVALCKLLLSKPDLLLL HHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHCCCCEEEE DEPTNHLDAETTAWLEKHLREYPGSVLIITHDRYFLDNVTGWILELDRGRGIPYEGNYSA ECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCEEEEEEECCCCCCCCCCCHH YLEAKAKRMAQEGREEAAREKALSREREWISASPKARQAKSKARIKAYDELVKSAEERRP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC GDAQIIIPVGERLGQVVIEVENLSKGFGDRLLIDDLSFKLPAGGIVGVIGPNGAGKSTLF CCCEEEEECCCCCCCEEEEEEHHCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCHHHHH KMLTGQEQPDKGSVRIGDTVHLSYVDQSRDALDPNKTVWEEISGGNDVIKLGKFEMNSRA HHHCCCCCCCCCCEEECCEEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEECCEECCCCE YCGAFNFKGGDQQQKVGNLSGGQRNRVHLAKMLKSGGNVLLLDEPTNDLDTETLGALEDA EEEEECCCCCCHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH LENFAGCAVIISHDRMFLDRLATHILAFEGDSHVEWFEGNFEDYEADKIRRLGPDSVNPK HHHHCCEEEEEECCHHHHHHHHHHHEEECCCCCCEEECCCCCCCCHHHHHHCCCCCCCCC RVTYKPLTR EEECCCCCC >Mature Secondary Structure ARQFIYHMSGLNKAYGNKKILENIHLSFYPDAKIGILGPNGAGKSTVLKIMAGLDKEYT CCHHHHHHHCCHHHHCCHHHHHHCCEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCC GEAWLAEGATCGYLPQEPELDPSKDVLGNVMEGVADKKAIIDRYNELMMNYSDETADEGA CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC KLQDIIDSQNLWDLESQVEMAMEALRCPPGDADVTKLSGGEKRRVALCKLLLSKPDLLLL HHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHCCCCEEEE DEPTNHLDAETTAWLEKHLREYPGSVLIITHDRYFLDNVTGWILELDRGRGIPYEGNYSA ECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCEEEEEEECCCCCCCCCCCHH YLEAKAKRMAQEGREEAAREKALSREREWISASPKARQAKSKARIKAYDELVKSAEERRP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC GDAQIIIPVGERLGQVVIEVENLSKGFGDRLLIDDLSFKLPAGGIVGVIGPNGAGKSTLF CCCEEEEECCCCCCCEEEEEEHHCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCHHHHH KMLTGQEQPDKGSVRIGDTVHLSYVDQSRDALDPNKTVWEEISGGNDVIKLGKFEMNSRA HHHCCCCCCCCCCEEECCEEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEECCEECCCCE YCGAFNFKGGDQQQKVGNLSGGQRNRVHLAKMLKSGGNVLLLDEPTNDLDTETLGALEDA EEEEECCCCCCHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH LENFAGCAVIISHDRMFLDRLATHILAFEGDSHVEWFEGNFEDYEADKIRRLGPDSVNPK HHHHCCEEEEEECCHHHHHHHHHHHEEECCCCCCEEECCCCCCCCHHHHHHCCCCCCCCC RVTYKPLTR EEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]