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The map label for this gene is cspE [C]

Identifier: 23502142

GI number: 23502142

Start: 1228731

End: 1229312

Strand: Reverse

Name: cspE [C]

Synonym: BR1266

Alternate gene names: 23502142

Gene position: 1229312-1228731 (Counterclockwise)

Preceding gene: 23502143

Following gene: 23502141

Centisome position: 58.32

GC content: 59.79

Gene sequence:

>582_bases
ATGGCGGACAAGTCTGTGTCTGATGACCAGTTCCACAGCCAGCACGCCTCGGAAGAACTGGGCGAGCTCATTGAGGTTTC
TGGTCATATCAAGTGGTTCGATGTGGCCAAGGGCTATGGCTTCATCGTGCCGGACCAGCCGGGTCTGACCGATATTCTCC
TGCACGTAACTTCATTGCGCCGCGACGAATTTCAGACGGCGCTGGAAGGTGCGCGCATCGTTTGCGAAGTCCGCCATGGC
GACCGCGGCCTGCAATGCTTCCGCGTTCTCTCCATGGATGCCTCAACCGCCATTCACCCCGCGCAGATGCCGCCGCAGCG
CACGCATGTTACCGTCACGCCATCGAGCGGGCTGGAGCGCGTGATCGTCAAGTGGTTCAACCGCACCAAGGGTTTCGGCT
TCCTGACGCGCGGTGAGGGGACGGAAGACATTTTCATTCACATGGAAACGCTGCGCCGTTTCGGCATGATGGAACTGCGC
CCCGGCCAGGTGGTGCTGATCCGCTTCGGCACCGGCGAAAAGGGCCTCATGGCAGCCGAAATCCACCCGGATATCGGAAC
AGCCATACCTGTTTCACATTAG

Upstream 100 bases:

>100_bases
GACAAAAGTTTAAGCTTGCCGCCTCCGGTTAAGGAAGTGTTATTCTTTAGGCAAGAATCAGGTCGGAAACCCGAAGGAAG
AACAGAGGAGAGGCGAACGC

Downstream 100 bases:

>100_bases
AGCGGTTCCGATTAAAACGGAATCGCTGGGACTGCTCTATCTCTTTGTTTTGCCGCCATTTTCAACGCATCGAAGCGGAA
GCAGAAATCAGCCCTGTGGA

Product: cold-shock family protein

Products: NA

Alternate protein names: Transcriptional Regulator Cold Shock Protein; Cold Shock-Like Protein CspA; Cold Shock Domain-Containing Protein CspD; Cold Shock-Like Protein CspE; Cold Shock Protein CspA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MADKSVSDDQFHSQHASEELGELIEVSGHIKWFDVAKGYGFIVPDQPGLTDILLHVTSLRRDEFQTALEGARIVCEVRHG
DRGLQCFRVLSMDASTAIHPAQMPPQRTHVTVTPSSGLERVIVKWFNRTKGFGFLTRGEGTEDIFIHMETLRRFGMMELR
PGQVVLIRFGTGEKGLMAAEIHPDIGTAIPVSH

Sequences:

>Translated_193_residues
MADKSVSDDQFHSQHASEELGELIEVSGHIKWFDVAKGYGFIVPDQPGLTDILLHVTSLRRDEFQTALEGARIVCEVRHG
DRGLQCFRVLSMDASTAIHPAQMPPQRTHVTVTPSSGLERVIVKWFNRTKGFGFLTRGEGTEDIFIHMETLRRFGMMELR
PGQVVLIRFGTGEKGLMAAEIHPDIGTAIPVSH
>Mature_192_residues
ADKSVSDDQFHSQHASEELGELIEVSGHIKWFDVAKGYGFIVPDQPGLTDILLHVTSLRRDEFQTALEGARIVCEVRHGD
RGLQCFRVLSMDASTAIHPAQMPPQRTHVTVTPSSGLERVIVKWFNRTKGFGFLTRGEGTEDIFIHMETLRRFGMMELRP
GQVVLIRFGTGEKGLMAAEIHPDIGTAIPVSH

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21505; Mature: 21374

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADKSVSDDQFHSQHASEELGELIEVSGHIKWFDVAKGYGFIVPDQPGLTDILLHVTSLR
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHH
RDEFQTALEGARIVCEVRHGDRGLQCFRVLSMDASTAIHPAQMPPQRTHVTVTPSSGLER
HHHHHHHHCCCEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCHHH
VIVKWFNRTKGFGFLTRGEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGTGEKGLMAAE
HHHHHHHCCCCCEEEECCCCCCEEEEEHHHHHHCCCEEECCCCEEEEEECCCCCCEEEEE
IHPDIGTAIPVSH
ECCCCCCCCCCCC
>Mature Secondary Structure 
ADKSVSDDQFHSQHASEELGELIEVSGHIKWFDVAKGYGFIVPDQPGLTDILLHVTSLR
CCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHH
RDEFQTALEGARIVCEVRHGDRGLQCFRVLSMDASTAIHPAQMPPQRTHVTVTPSSGLER
HHHHHHHHCCCEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCHHH
VIVKWFNRTKGFGFLTRGEGTEDIFIHMETLRRFGMMELRPGQVVLIRFGTGEKGLMAAE
HHHHHHHCCCCCEEEECCCCCCEEEEEHHHHHHCCCEEECCCCEEEEEECCCCCCEEEEE
IHPDIGTAIPVSH
ECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA