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The map label for this gene is 23502132

Identifier: 23502132

GI number: 23502132

Start: 1222086

End: 1222847

Strand: Reverse

Name: 23502132

Synonym: BR1256

Alternate gene names: NA

Gene position: 1222847-1222086 (Counterclockwise)

Preceding gene: 23502136

Following gene: 23502130

Centisome position: 58.02

GC content: 57.61

Gene sequence:

>762_bases
ATGCTTCCGAAAGACAAGAGAGAGCAGCACTTCATGAGCATTCCCCAGCCGGAAATGCGCGGCACAGGCGGCCGCGAGCC
GATCTTCAATATTCCGGGTGTCGTGATTGCTCTGATCGGGTTGTGTGTCGCGGTCTATGTCTATCAGAATTATATTCTGA
GCGAGCGGCAGGATTTTGAGTTCATGATGAACTTTGCGCTGATCCCGGCGCGCTTTTCGATGGCGAGCGGCTTTGTTGAT
CCGGCGGTGATTTTTACGTTTATCAGCTATTCCTTCATGCATGGCAGTTTTGCGCATATTGCCGTCAATATGATCTGGCT
TGCCGCATTCGGCTCGCCGCTGGCCGGGCGAATCGGCGCGGTCCGGATGATCCTATTCTGGGTTTTCACGTCGGTCGTCG
CGGGGCTTACGCATTACGCACTCCATCCCGAAAGCCTTTCGCCGCTGGTGGGTGCGTCGGGCGCGATTTCGGGCATGATG
GGAGCTGCCGCCCGCTATGGTTTTCGGCGTGTCGGCTATGGCCGGCGCTCGGAATTTGCCGGGCCGGTGCTTCCCATCGG
GCTGACGCTGACGCTCAAGCCCGTCCTCATTTTTGTCGGCGTCTGGTTTCTCATCAATATCGTCACCGGCCTTTATTCCA
CTGGCGGCGCCGACTTTTCCCGCATTGCCTGGGAGGCGCATATAGGCGGCTTCATTGCCGGGTTTTTCGGGATTCCACTG
ATGGACCGCCCGCGCAGCTATGATGCCGTTTTGAGGCGATAG

Upstream 100 bases:

>100_bases
GGGCCGGTCGGGAAACTCCGCCGGCCTTTATTTTTAACATATTCTACCCTATCAACATGTGTGATGCGCAGGGAAGGCGA
ACCGTAAGGGGCGCCTGCCG

Downstream 100 bases:

>100_bases
ATCCTGCGCCATTTCTGGCTTTGACCAAGCCTTCCCCTATTTGATGCCACTTGCCAATCAGGCGATCAAAGCGCACCATC
ATGGAACGCGGTCGAAGGGA

Product: rhomboid family protein

Products: NA

Alternate protein names: Rhomboid-Like Protein; Rhombiod Family Transmembrane Protein; Peptidase Protein; S54 Family Peptidase; Peptidase

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MLPKDKREQHFMSIPQPEMRGTGGREPIFNIPGVVIALIGLCVAVYVYQNYILSERQDFEFMMNFALIPARFSMASGFVD
PAVIFTFISYSFMHGSFAHIAVNMIWLAAFGSPLAGRIGAVRMILFWVFTSVVAGLTHYALHPESLSPLVGASGAISGMM
GAAARYGFRRVGYGRRSEFAGPVLPIGLTLTLKPVLIFVGVWFLINIVTGLYSTGGADFSRIAWEAHIGGFIAGFFGIPL
MDRPRSYDAVLRR

Sequences:

>Translated_253_residues
MLPKDKREQHFMSIPQPEMRGTGGREPIFNIPGVVIALIGLCVAVYVYQNYILSERQDFEFMMNFALIPARFSMASGFVD
PAVIFTFISYSFMHGSFAHIAVNMIWLAAFGSPLAGRIGAVRMILFWVFTSVVAGLTHYALHPESLSPLVGASGAISGMM
GAAARYGFRRVGYGRRSEFAGPVLPIGLTLTLKPVLIFVGVWFLINIVTGLYSTGGADFSRIAWEAHIGGFIAGFFGIPL
MDRPRSYDAVLRR
>Mature_253_residues
MLPKDKREQHFMSIPQPEMRGTGGREPIFNIPGVVIALIGLCVAVYVYQNYILSERQDFEFMMNFALIPARFSMASGFVD
PAVIFTFISYSFMHGSFAHIAVNMIWLAAFGSPLAGRIGAVRMILFWVFTSVVAGLTHYALHPESLSPLVGASGAISGMM
GAAARYGFRRVGYGRRSEFAGPVLPIGLTLTLKPVLIFVGVWFLINIVTGLYSTGGADFSRIAWEAHIGGFIAGFFGIPL
MDRPRSYDAVLRR

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27785; Mature: 27785

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCHHHHHCC
>Mature Secondary Structure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CCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA