Click here to switch to the map view.

The map label for this gene is omp85 [H]

Identifier: 23502032

GI number: 23502032

Start: 1133323

End: 1135668

Strand: Reverse

Name: omp85 [H]

Synonym: BR1154

Alternate gene names: 23502032

Gene position: 1135668-1133323 (Counterclockwise)

Preceding gene: 23502033

Following gene: 23502031

Centisome position: 53.88

GC content: 54.43

Gene sequence:

>2346_bases
ATGACGGCAAGTTCTAAATTCTTTGGCGCCGCTTCTGCGCTCGCCATGTCAGTGGCTCTTGTGGCTTCGGGTACTGCTGG
TTTCTCCTTGGCATCGGTCAGTGTGGCCGAGGCAGCCGTCGTCAGCCGTATCGAAGTGCGTGGCAATACACGCGTCGATG
CTCAGACGATTCGCGATAATATCGACATAAGGCCGGGCAAGGCCTTCACCAGCGCGGATATCGATGCTGCGGTGAAGCGC
CTTTTTGCCATGGGTCTGTTTTCCGATGTTCGCATCCACCAGTCCGGCAGCACGCTGATCGTTCAGGTGGAAGAGCGTTC
GGTGGTCAACAATGTGCTGTTCCAGGGCAATAAGAAGATCAAGGATCCTGATCTTGCACGTGCCGTGCAGCTCAAGCCGC
GTGCGCCTTTCGATATGGCCACGATGGAAGCCGACAAGGAAGCGATCAAGGCTGCCTACTCCCATATCGGGCGCAGCGAT
GCGACTGTTAACGCTCGCACGGTCGATCTTGGTCAGGGCCGCGTGAATGTCGTTTACGAAATCAACGAAGGTTCGCGCAC
CAAGATTGCCAATATTGAATTTGTCGGCAATCAGGCGTTTAGCGGGCGCCGCCTGCGTGACGTTATTTCCACCAAGCGTT
CAAATCCGCTTTCCTGGCTGACGCGTAACGACGTTTATGATGAAGGCCGCCTTCAGGCCGACGAAGAAACGCTGCGTCGC
TTCTATTACAACCGCGGCTATGCGGATTTCCGTGTGCTTTCGTCGAATGCGGTTCTCGATCCGTCGACGAACGAATATAC
GATCACGATCACCGTGGATGAAGGTCCGCGTTATACTTTCGGCGATGTAAGCGTGGAAAGCACCGTTGATGGTGTCGATA
CGCAGGCGCTTGATCGTCTGGTCAAGACCCGTACGGGCAAGCCTTACAGCGCGAAGGAAATCGAAGATTCGGTTCTCTCC
GTTACGGAGAGTGTTGCCGGCAGCGGTTATGCCTTTGCAAAGGTTGAGCCGCGTGGTGATCGTAACTTTGAAAATCACAC
GATTTCCGTGGTCTATAGTGTTGATCAGGGGCCGCGTGCCTACATTCAGCGCATCGAAATCCGTGGTAACGACAAGACCC
GCGATTATGTGATTCGTCGTGAATTCGACCTGAACGAAGGCGATGCCTTCAATCAGGTCATGGTGCAGCGCGCCAAGCGT
CGCCTTGAGGCGCTCGACTTCTTCCAGACGGTCAACATCTCGACCGCTCCGGGTTCCGAGCCGGATCAGGTGATCCTGGT
TGTCGATGTTGTCGAAAAGTCGACGGGTGAATTCTCGATCGGTGGCGGCTATACGACCGGCGGTGAATCGCCGGGTGCAC
AGGTTGAAGCGGCAATCACCGAGCGCAACTTCCTTGGTCGCGGCCAGTATATTCGCATCAGCGCGGGTGCCGGTCAGGAC
GATATGCGCAATTACGGCCTGTCGTTCACGGAGCCATATTTCCTTGGCTATCGCCTCTCGGCTGGCTTCGACGTATTCCG
CCGCTCATATCGTGTGAATGACGATTATGATGTCGAGCAGACTGGCGGTACGATCCGTTTCGGCCTGCCGATCACGGACA
ACTTCTCTGCTGGCATCGCGTATAACCTGGTTCAGGAAAAGTATGACCTGTTCCGTGGCGATGCAGAAAATTATTACGCT
CCGGCGCTGCTGGAAGCTGCTGAAAACAGCCCGTGGCTCCGCTCGTCGGTCAGCTACTCGCTGACCTATAGTTCCATCGA
TGACATAAAGAACCCGCATGATGGACTTTATGGCAAGTTTATTCAGGAATTCGCTGGTCTTGGTGGTGATGCGAAATATG
TGAAGACGACCTTCAAGGGCAACTACTACCAGACGCTGTCGCAGGAAGCGGATATCGTCGGTTTGCTGGGTGTCGGTGCC
GGTTATATTCATGAATTCGGTGATGATGGCGTTCGCATCTTCGACCTGTTCAAGAACAGTTCGGATATTATTCGCGGCTT
CAAGTTCAACGGTATCGGCCCGTATCAGGATGCCAAGAACGGCAAGCGTTACTGGATGGGGGGAACCACCTATTTCAGCG
GTACTGCTGAAGTTCAGTTCCCGATGCCGGTCCTTCCTGAAAGCCTGGGTGTGCGTGGTGCATTCTTTGCCGACGCCGCT
ACGCTTTACGGCAATGATACGCCAGACATTAGTGGCGACGACAAGAAGCTTCGTGCTTCGGTTGGCGTCAGCTTGATGTG
GGCTTCACCGTTCGGTCCGTTGCGCTTTGACTATGCATTCCCTGTTGCAAAAGCTGATACTGACAAGGTTCAGAACTTCA
ACTTCGGTGTATCGACAAAGTTCTGA

Upstream 100 bases:

>100_bases
ATGCTTGCTTGTATGGAAAAACCGGATAATACGGTTGTATCTGTACGTGCTTTTCTGGGTAAACGTCCCGGGGACAGAAA
AACGAAGGTTCGGAAAGCCT

Downstream 100 bases:

>100_bases
TCGATTTGCCTTTTCTCGGGGCGCCTTTACGCCCCGAGGAAGAAAGTGTTTTGATGGCAGATCCCATTTTTTTCAAACCG
TCGCGTGAGCTCACGATTGG

Product: surface antigen

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 781; Mature: 780

Protein sequence:

>781_residues
MTASSKFFGAASALAMSVALVASGTAGFSLASVSVAEAAVVSRIEVRGNTRVDAQTIRDNIDIRPGKAFTSADIDAAVKR
LFAMGLFSDVRIHQSGSTLIVQVEERSVVNNVLFQGNKKIKDPDLARAVQLKPRAPFDMATMEADKEAIKAAYSHIGRSD
ATVNARTVDLGQGRVNVVYEINEGSRTKIANIEFVGNQAFSGRRLRDVISTKRSNPLSWLTRNDVYDEGRLQADEETLRR
FYYNRGYADFRVLSSNAVLDPSTNEYTITITVDEGPRYTFGDVSVESTVDGVDTQALDRLVKTRTGKPYSAKEIEDSVLS
VTESVAGSGYAFAKVEPRGDRNFENHTISVVYSVDQGPRAYIQRIEIRGNDKTRDYVIRREFDLNEGDAFNQVMVQRAKR
RLEALDFFQTVNISTAPGSEPDQVILVVDVVEKSTGEFSIGGGYTTGGESPGAQVEAAITERNFLGRGQYIRISAGAGQD
DMRNYGLSFTEPYFLGYRLSAGFDVFRRSYRVNDDYDVEQTGGTIRFGLPITDNFSAGIAYNLVQEKYDLFRGDAENYYA
PALLEAAENSPWLRSSVSYSLTYSSIDDIKNPHDGLYGKFIQEFAGLGGDAKYVKTTFKGNYYQTLSQEADIVGLLGVGA
GYIHEFGDDGVRIFDLFKNSSDIIRGFKFNGIGPYQDAKNGKRYWMGGTTYFSGTAEVQFPMPVLPESLGVRGAFFADAA
TLYGNDTPDISGDDKKLRASVGVSLMWASPFGPLRFDYAFPVAKADTDKVQNFNFGVSTKF

Sequences:

>Translated_781_residues
MTASSKFFGAASALAMSVALVASGTAGFSLASVSVAEAAVVSRIEVRGNTRVDAQTIRDNIDIRPGKAFTSADIDAAVKR
LFAMGLFSDVRIHQSGSTLIVQVEERSVVNNVLFQGNKKIKDPDLARAVQLKPRAPFDMATMEADKEAIKAAYSHIGRSD
ATVNARTVDLGQGRVNVVYEINEGSRTKIANIEFVGNQAFSGRRLRDVISTKRSNPLSWLTRNDVYDEGRLQADEETLRR
FYYNRGYADFRVLSSNAVLDPSTNEYTITITVDEGPRYTFGDVSVESTVDGVDTQALDRLVKTRTGKPYSAKEIEDSVLS
VTESVAGSGYAFAKVEPRGDRNFENHTISVVYSVDQGPRAYIQRIEIRGNDKTRDYVIRREFDLNEGDAFNQVMVQRAKR
RLEALDFFQTVNISTAPGSEPDQVILVVDVVEKSTGEFSIGGGYTTGGESPGAQVEAAITERNFLGRGQYIRISAGAGQD
DMRNYGLSFTEPYFLGYRLSAGFDVFRRSYRVNDDYDVEQTGGTIRFGLPITDNFSAGIAYNLVQEKYDLFRGDAENYYA
PALLEAAENSPWLRSSVSYSLTYSSIDDIKNPHDGLYGKFIQEFAGLGGDAKYVKTTFKGNYYQTLSQEADIVGLLGVGA
GYIHEFGDDGVRIFDLFKNSSDIIRGFKFNGIGPYQDAKNGKRYWMGGTTYFSGTAEVQFPMPVLPESLGVRGAFFADAA
TLYGNDTPDISGDDKKLRASVGVSLMWASPFGPLRFDYAFPVAKADTDKVQNFNFGVSTKF
>Mature_780_residues
TASSKFFGAASALAMSVALVASGTAGFSLASVSVAEAAVVSRIEVRGNTRVDAQTIRDNIDIRPGKAFTSADIDAAVKRL
FAMGLFSDVRIHQSGSTLIVQVEERSVVNNVLFQGNKKIKDPDLARAVQLKPRAPFDMATMEADKEAIKAAYSHIGRSDA
TVNARTVDLGQGRVNVVYEINEGSRTKIANIEFVGNQAFSGRRLRDVISTKRSNPLSWLTRNDVYDEGRLQADEETLRRF
YYNRGYADFRVLSSNAVLDPSTNEYTITITVDEGPRYTFGDVSVESTVDGVDTQALDRLVKTRTGKPYSAKEIEDSVLSV
TESVAGSGYAFAKVEPRGDRNFENHTISVVYSVDQGPRAYIQRIEIRGNDKTRDYVIRREFDLNEGDAFNQVMVQRAKRR
LEALDFFQTVNISTAPGSEPDQVILVVDVVEKSTGEFSIGGGYTTGGESPGAQVEAAITERNFLGRGQYIRISAGAGQDD
MRNYGLSFTEPYFLGYRLSAGFDVFRRSYRVNDDYDVEQTGGTIRFGLPITDNFSAGIAYNLVQEKYDLFRGDAENYYAP
ALLEAAENSPWLRSSVSYSLTYSSIDDIKNPHDGLYGKFIQEFAGLGGDAKYVKTTFKGNYYQTLSQEADIVGLLGVGAG
YIHEFGDDGVRIFDLFKNSSDIIRGFKFNGIGPYQDAKNGKRYWMGGTTYFSGTAEVQFPMPVLPESLGVRGAFFADAAT
LYGNDTPDISGDDKKLRASVGVSLMWASPFGPLRFDYAFPVAKADTDKVQNFNFGVSTKF

Specific function: Unknown

COG id: COG4775

COG function: function code M; Outer membrane protein/protective antigen OMA87

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen D15 family [H]

Homologues:

Organism=Escherichia coli, GI1786374, Length=826, Percent_Identity=28.9346246973366, Blast_Score=296, Evalue=4e-81,

Paralogues:

None

Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR016474
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 85920; Mature: 85788

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASSKFFGAASALAMSVALVASGTAGFSLASVSVAEAAVVSRIEVRGNTRVDAQTIRDN
CCCCCCHHHHHHHHHHHHHHEECCCCCCEEEHHHHHHHHHHHEEEECCCCCCCHHHHHCC
IDIRPGKAFTSADIDAAVKRLFAMGLFSDVRIHQSGSTLIVQVEERSVVNNVLFQGNKKI
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCEEEECCCCEEEEEECCHHHHHHHHHCCCCCC
KDPDLARAVQLKPRAPFDMATMEADKEAIKAAYSHIGRSDATVNARTVDLGQGRVNVVYE
CCCCHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEE
INEGSRTKIANIEFVGNQAFSGRRLRDVISTKRSNPLSWLTRNDVYDEGRLQADEETLRR
ECCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHH
FYYNRGYADFRVLSSNAVLDPSTNEYTITITVDEGPRYTFGDVSVESTVDGVDTQALDRL
HHHCCCCCEEEEEECCEEECCCCCCEEEEEEECCCCCEEECCEEHHCCCCCCCHHHHHHH
VKTRTGKPYSAKEIEDSVLSVTESVAGSGYAFAKVEPRGDRNFENHTISVVYSVDQGPRA
HHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCHH
YIQRIEIRGNDKTRDYVIRREFDLNEGDAFNQVMVQRAKRRLEALDFFQTVNISTAPGSE
EEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCC
PDQVILVVDVVEKSTGEFSIGGGYTTGGESPGAQVEAAITERNFLGRGQYIRISAGAGQD
CCCEEEEEEEECCCCCCEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCHH
DMRNYGLSFTEPYFLGYRLSAGFDVFRRSYRVNDDYDVEQTGGTIRFGLPITDNFSAGIA
HHHHCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCCHHHCCCEEEECCCCCCCCCCCHH
YNLVQEKYDLFRGDAENYYAPALLEAAENSPWLRSSVSYSLTYSSIDDIKNPHDGLYGKF
HHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCEECCCEEEEEECCHHHCCCCCCCHHHHH
IQEFAGLGGDAKYVKTTFKGNYYQTLSQEADIVGLLGVGAGYIHEFGDDGVRIFDLFKNS
HHHHHCCCCCCEEEEEEECCCHHHHHCCCCCEEEEEECCCHHHHHCCCCCEEEEEECCCC
SDIIRGFKFNGIGPYQDAKNGKRYWMGGTTYFSGTAEVQFPMPVLPESLGVRGAFFADAA
CHHHCCEECCCCCCCCCCCCCCEEEECCEEEECCEEEEEECCCCCCHHHCCCEEEHHCCC
TLYGNDTPDISGDDKKLRASVGVSLMWASPFGPLRFDYAFPVAKADTDKVQNFNFGVSTK
EECCCCCCCCCCCCHHEEHCCCEEEEEECCCCCEEEEEECCCCCCCCHHHCCCCCCEECC
F
C
>Mature Secondary Structure 
TASSKFFGAASALAMSVALVASGTAGFSLASVSVAEAAVVSRIEVRGNTRVDAQTIRDN
CCCCCHHHHHHHHHHHHHHEECCCCCCEEEHHHHHHHHHHHEEEECCCCCCCHHHHHCC
IDIRPGKAFTSADIDAAVKRLFAMGLFSDVRIHQSGSTLIVQVEERSVVNNVLFQGNKKI
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCEEEECCCCEEEEEECCHHHHHHHHHCCCCCC
KDPDLARAVQLKPRAPFDMATMEADKEAIKAAYSHIGRSDATVNARTVDLGQGRVNVVYE
CCCCHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEE
INEGSRTKIANIEFVGNQAFSGRRLRDVISTKRSNPLSWLTRNDVYDEGRLQADEETLRR
ECCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHH
FYYNRGYADFRVLSSNAVLDPSTNEYTITITVDEGPRYTFGDVSVESTVDGVDTQALDRL
HHHCCCCCEEEEEECCEEECCCCCCEEEEEEECCCCCEEECCEEHHCCCCCCCHHHHHHH
VKTRTGKPYSAKEIEDSVLSVTESVAGSGYAFAKVEPRGDRNFENHTISVVYSVDQGPRA
HHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCHH
YIQRIEIRGNDKTRDYVIRREFDLNEGDAFNQVMVQRAKRRLEALDFFQTVNISTAPGSE
EEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCC
PDQVILVVDVVEKSTGEFSIGGGYTTGGESPGAQVEAAITERNFLGRGQYIRISAGAGQD
CCCEEEEEEEECCCCCCEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCHH
DMRNYGLSFTEPYFLGYRLSAGFDVFRRSYRVNDDYDVEQTGGTIRFGLPITDNFSAGIA
HHHHCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCCHHHCCCEEEECCCCCCCCCCCHH
YNLVQEKYDLFRGDAENYYAPALLEAAENSPWLRSSVSYSLTYSSIDDIKNPHDGLYGKF
HHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCEECCCEEEEEECCHHHCCCCCCCHHHHH
IQEFAGLGGDAKYVKTTFKGNYYQTLSQEADIVGLLGVGAGYIHEFGDDGVRIFDLFKNS
HHHHHCCCCCCEEEEEEECCCHHHHHCCCCCEEEEEECCCHHHHHCCCCCEEEEEECCCC
SDIIRGFKFNGIGPYQDAKNGKRYWMGGTTYFSGTAEVQFPMPVLPESLGVRGAFFADAA
CHHHCCEECCCCCCCCCCCCCCEEEECCEEEECCEEEEEECCCCCCHHHCCCEEEHHCCC
TLYGNDTPDISGDDKKLRASVGVSLMWASPFGPLRFDYAFPVAKADTDKVQNFNFGVSTK
EECCCCCCCCCCCCHHEEHCCCEEEEEECCCCCEEEEEECCCCCCCCHHHCCCCCCEECC
F
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]