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The map label for this gene is 23500998

Identifier: 23500998

GI number: 23500998

Start: 88576

End: 89166

Strand: Reverse

Name: 23500998

Synonym: BR0084

Alternate gene names: NA

Gene position: 89166-88576 (Counterclockwise)

Preceding gene: 23500999

Following gene: 23500996

Centisome position: 4.23

GC content: 61.25

Gene sequence:

>591_bases
ATGCCGCGTCTTTTTACTGCCCTCGAAATCCCGCGCGACGCCGCGCTTTCGCTCTCGCTGCTGCGAGGCGGCCTTCCCGG
CGCACGCTGGATTGATGTTGAAAACTACCACATAACCTTGCGTTTTATCGGAGATGTGGAAGGCCATATGGCCGACGAGA
TCGCCAACGCGCTCGATCGTGTGCGGCGCCCTGAATTCATGCTCAATCTCTCCGGCGTTGATGCTTTCGGCTCCAAAAAA
CCGCACAGCATCTATGCGGGCGTGTCGCCCTCGCCCGGACTCAACGCCTTGCAGGCCGAAATAGAGCGCATCTGCCAGCG
CCTGCGTCTTCCCGCCGACCCGCGCAAGTTCACGCCGCATGTGACACTGGCACGGTTGAAAAATGCCCGCATCGAGGATG
TGGTGCACTATCTTTCCGGGCGGGCAAACTTCGCCACGCTGCCCTTCAAGGTCGGGCGGTTCGTCTTGATGTCGTCGCGC
GATTCGGTCGGCGGCGGCCCTTATATCGTTGAGGAAGCCTGGCCCTTAATGGCGCGCTCCGGCCAGAACTGGTCGGCGAG
CGCCGTGGAGGCAGTAAGGACCATCCGGTAA

Upstream 100 bases:

>100_bases
TTCGATGGAACGATACACTGACTCTCCAGGTTGGAGTGTCCTTTACCCGTCCCGAAGGGTGCCGGCGCTCTGACAGAGAA
CGCTTCGAGGAGGATGCCTT

Downstream 100 bases:

>100_bases
ACCAGCTCGAAATCTCCGATTTCGCCATAATAGGGATCGGGGATTTCAACCGGTTTTCCCTCCGCAACCTCGGTGAAAAG
CCCGATCCGCGCCGTTATCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MPRLFTALEIPRDAALSLSLLRGGLPGARWIDVENYHITLRFIGDVEGHMADEIANALDRVRRPEFMLNLSGVDAFGSKK
PHSIYAGVSPSPGLNALQAEIERICQRLRLPADPRKFTPHVTLARLKNARIEDVVHYLSGRANFATLPFKVGRFVLMSSR
DSVGGGPYIVEEAWPLMARSGQNWSASAVEAVRTIR

Sequences:

>Translated_196_residues
MPRLFTALEIPRDAALSLSLLRGGLPGARWIDVENYHITLRFIGDVEGHMADEIANALDRVRRPEFMLNLSGVDAFGSKK
PHSIYAGVSPSPGLNALQAEIERICQRLRLPADPRKFTPHVTLARLKNARIEDVVHYLSGRANFATLPFKVGRFVLMSSR
DSVGGGPYIVEEAWPLMARSGQNWSASAVEAVRTIR
>Mature_195_residues
PRLFTALEIPRDAALSLSLLRGGLPGARWIDVENYHITLRFIGDVEGHMADEIANALDRVRRPEFMLNLSGVDAFGSKKP
HSIYAGVSPSPGLNALQAEIERICQRLRLPADPRKFTPHVTLARLKNARIEDVVHYLSGRANFATLPFKVGRFVLMSSRD
SVGGGPYIVEEAWPLMARSGQNWSASAVEAVRTIR

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0097 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 21701; Mature: 21570

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRLFTALEIPRDAALSLSLLRGGLPGARWIDVENYHITLRFIGDVEGHMADEIANALDR
CCCCCHHHCCCCHHHHHHHHHHCCCCCCEEEEECCEEEEEEEECCCCHHHHHHHHHHHHH
VRRPEFMLNLSGVDAFGSKKPHSIYAGVSPSPGLNALQAEIERICQRLRLPADPRKFTPH
HCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
VTLARLKNARIEDVVHYLSGRANFATLPFKVGRFVLMSSRDSVGGGPYIVEEAWPLMARS
HHHHHHHCCHHHHHHHHHCCCCCEEECCHHHCEEEEEECCCCCCCCCEEECCCCHHHHCC
GQNWSASAVEAVRTIR
CCCCCHHHHHHHHHCC
>Mature Secondary Structure 
PRLFTALEIPRDAALSLSLLRGGLPGARWIDVENYHITLRFIGDVEGHMADEIANALDR
CCCCHHHCCCCHHHHHHHHHHCCCCCCEEEEECCEEEEEEEECCCCHHHHHHHHHHHHH
VRRPEFMLNLSGVDAFGSKKPHSIYAGVSPSPGLNALQAEIERICQRLRLPADPRKFTPH
HCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
VTLARLKNARIEDVVHYLSGRANFATLPFKVGRFVLMSSRDSVGGGPYIVEEAWPLMARS
HHHHHHHCCHHHHHHHHHCCCCCEEECCHHHCEEEEEECCCCCCCCCEEECCCCHHHHCC
GQNWSASAVEAVRTIR
CCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]