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The map label for this gene is rpoE [C]

Identifier: 23100811

GI number: 23100811

Start: 3491447

End: 3492034

Strand: Direct

Name: rpoE [C]

Synonym: OB3356

Alternate gene names: 23100811

Gene position: 3491447-3492034 (Clockwise)

Preceding gene: 23100810

Following gene: 23100812

Centisome position: 96.17

GC content: 42.01

Gene sequence:

>588_bases
TTGCATCTTATCGCGCGTTTAAAACAGAGAGACGAAGACGCATTAATCGAAGTGATGAATACCTATGGCGATTACTTATT
ACGAACGGCCTACCTGCTCGTCAAAGACCATCAGTTGGCGGAAGAAGCTGTACAAGATACATTTATCACCGCTTTTGAGA
AGATTCATCAGCTCGAGGATGCCGCAAAGCTCAAGAGTTGGCTAACGACGATCATCATCAATCGCTGCCGCTCCTATATG
CGAAAAAACAGCTGGAAGAACCTCCTGCCAACGATCGATTTTAACCTGTTCCAATTGTTTAAAGAAGATACATCTGCTGG
TAATCCAGAAGACTTTCTCCTTCAGTGGGAAGGGAATCAACAACTGAGCGCTGCGATTCAACAATTGGATTATAAATACC
GTGAAGTCATTACGCTCTTTTACTATAACGAAATGAAAATTACCCAAATCGCGCTACATACCCATGCCAATGAAAATACA
GTGAAATCCAAGTTAAAGCGTGCGCGAACACTATTAAAAGATATCTTACTGAAAGGAGAGGAATCCGATGAAGCGACAAC
AGCAAACCATAAAACAACAGCTCGATAA

Upstream 100 bases:

>100_bases
CAACCGCATCTATATATTATACTCAAATTAAATAAATCCACCGAACACACACCACGACCGACTTGCCACCACATACAAAA
AGAAAGGGGGAGTGACTCGA

Downstream 100 bases:

>100_bases
TGAATTAGAACAACTCACGTTTACCAAACAAGCGGTTATCATCCACCATGTCCAAAAACAAACATGGAAACAAAAATGCG
CTGCCATCTGGAATAAGGAA

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma Factor; RNA Polymerase Factor Sigma C; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; Sigma-70 Family RNA Polymerase Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase; Sigma-; RNA Polymerase Sigma Subunit; RNA Polymerase Sigma Factor SigW; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma Factor Y; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Family DNA-Directed RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor Family; ECF Family DNA-Directed RNA Polymerase Sigma Subunit SigV; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family Protein; RNA Polymerase Sigma; RNA Polymerase Ecf-Type Sigma Factor

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MHLIARLKQRDEDALIEVMNTYGDYLLRTAYLLVKDHQLAEEAVQDTFITAFEKIHQLEDAAKLKSWLTTIIINRCRSYM
RKNSWKNLLPTIDFNLFQLFKEDTSAGNPEDFLLQWEGNQQLSAAIQQLDYKYREVITLFYYNEMKITQIALHTHANENT
VKSKLKRARTLLKDILLKGEESDEATTANHKTTAR

Sequences:

>Translated_195_residues
MHLIARLKQRDEDALIEVMNTYGDYLLRTAYLLVKDHQLAEEAVQDTFITAFEKIHQLEDAAKLKSWLTTIIINRCRSYM
RKNSWKNLLPTIDFNLFQLFKEDTSAGNPEDFLLQWEGNQQLSAAIQQLDYKYREVITLFYYNEMKITQIALHTHANENT
VKSKLKRARTLLKDILLKGEESDEATTANHKTTAR
>Mature_195_residues
MHLIARLKQRDEDALIEVMNTYGDYLLRTAYLLVKDHQLAEEAVQDTFITAFEKIHQLEDAAKLKSWLTTIIINRCRSYM
RKNSWKNLLPTIDFNLFQLFKEDTSAGNPEDFLLQWEGNQQLSAAIQQLDYKYREVITLFYYNEMKITQIALHTHANENT
VKSKLKRARTLLKDILLKGEESDEATTANHKTTAR

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22826; Mature: 22826

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLIARLKQRDEDALIEVMNTYGDYLLRTAYLLVKDHQLAEEAVQDTFITAFEKIHQLED
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAKLKSWLTTIIINRCRSYMRKNSWKNLLPTIDFNLFQLFKEDTSAGNPEDFLLQWEGNQ
HHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCH
QLSAAIQQLDYKYREVITLFYYNEMKITQIALHTHANENTVKSKLKRARTLLKDILLKGE
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
ESDEATTANHKTTAR
CCCCCCCCCCCCCCC
>Mature Secondary Structure
MHLIARLKQRDEDALIEVMNTYGDYLLRTAYLLVKDHQLAEEAVQDTFITAFEKIHQLED
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAKLKSWLTTIIINRCRSYMRKNSWKNLLPTIDFNLFQLFKEDTSAGNPEDFLLQWEGNQ
HHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCH
QLSAAIQQLDYKYREVITLFYYNEMKITQIALHTHANENTVKSKLKRARTLLKDILLKGE
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
ESDEATTANHKTTAR
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA