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The map label for this gene is comK [H]

Identifier: 23100786

GI number: 23100786

Start: 3468763

End: 3469224

Strand: Direct

Name: comK [H]

Synonym: OB3331

Alternate gene names: 23100786

Gene position: 3468763-3469224 (Clockwise)

Preceding gene: 28563950

Following gene: 23100787

Centisome position: 95.54

GC content: 34.2

Gene sequence:

>462_bases
ATGATCTCGCCACCATTTGCTGGTATTTCACCTTTGACAATGGCAATCTTACCTAAAAATAGATTCAATGTTTCCTCTAC
CATTCTAGAAATACATCAAACAATAGAGCAAAACAAACTACCTATTCAACTAATCAGAGAAGGATGTTTATATCATTATT
CCACTTATGAAGGTAGAAAAGCCGCTACTTACTACCACACTGGCTTCAAACGAAAAGTTCCTATTGTGATTAGTGTTTCA
CACCAAATTATAGCTTTCCCCACCCATGCTACTACAGATATTAATTGTAACTGGATCTTTTATCATCACGTCGAATCCAT
TCAGTCAGAATCTGATAGAAATCAACCTACTTCAATGATTACATTTCGAAATGGTATTCAACTCAACATCAACCTTCCTG
CTCCATTTCTAAAAGAACAAATGACTCGTTGTTTAGCTTGTTTTTATAGCATTAAAAAATAA

Upstream 100 bases:

>100_bases
ATTGGAAAGCAACTGATATAGATGTAAATAGACTATTTCAAGAACTGGATGAACTTGAGAGAAAACTAAAGAGCCAGCAT
TCTTCTGAGGTCGATTCTGA

Downstream 100 bases:

>100_bases
TTATTAATCAGAAATTTCTTATTATTCATTGCAGAATTAAGCATTAAGTGAGACAATAGAACTAGAAAAAAAGGAGTGGT
GAGATGGAAAATGAATATAA

Product: hypothetical protein

Products: NA

Alternate protein names: CTF; Competence protein K [H]

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MISPPFAGISPLTMAILPKNRFNVSSTILEIHQTIEQNKLPIQLIREGCLYHYSTYEGRKAATYYHTGFKRKVPIVISVS
HQIIAFPTHATTDINCNWIFYHHVESIQSESDRNQPTSMITFRNGIQLNINLPAPFLKEQMTRCLACFYSIKK

Sequences:

>Translated_153_residues
MISPPFAGISPLTMAILPKNRFNVSSTILEIHQTIEQNKLPIQLIREGCLYHYSTYEGRKAATYYHTGFKRKVPIVISVS
HQIIAFPTHATTDINCNWIFYHHVESIQSESDRNQPTSMITFRNGIQLNINLPAPFLKEQMTRCLACFYSIKK
>Mature_153_residues
MISPPFAGISPLTMAILPKNRFNVSSTILEIHQTIEQNKLPIQLIREGCLYHYSTYEGRKAATYYHTGFKRKVPIVISVS
HQIIAFPTHATTDINCNWIFYHHVESIQSESDRNQPTSMITFRNGIQLNINLPAPFLKEQMTRCLACFYSIKK

Specific function: Intermediate regulatory gene required for the expression of the late competence genes comC, comE, comG and the bdbDC operon. Receives signals from SrfA, and possibly other regulatory COM genes, and transduces these signals to the late COM genes [H]

COG id: COG4903

COG function: function code K; Genetic competence transcription factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010461 [H]

Pfam domain/function: PF06338 ComK [H]

EC number: NA

Molecular weight: Translated: 17587; Mature: 17587

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISPPFAGISPLTMAILPKNRFNVSSTILEIHQTIEQNKLPIQLIREGCLYHYSTYEGRK
CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHEEECCCCCCE
AATYYHTGFKRKVPIVISVSHQIIAFPTHATTDINCNWIFYHHVESIQSESDRNQPTSMI
EEEEEECCCCCCCCEEEEECCEEEEECCCCCCCCCEEEEEEEHHHHHHHCCCCCCCCEEE
TFRNGIQLNINLPAPFLKEQMTRCLACFYSIKK
EEECCEEEEEECCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MISPPFAGISPLTMAILPKNRFNVSSTILEIHQTIEQNKLPIQLIREGCLYHYSTYEGRK
CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHEEECCCCCCE
AATYYHTGFKRKVPIVISVSHQIIAFPTHATTDINCNWIFYHHVESIQSESDRNQPTSMI
EEEEEECCCCCCCCEEEEECCEEEEECCCCCCCCCEEEEEEEHHHHHHHCCCCCCCCEEE
TFRNGIQLNINLPAPFLKEQMTRCLACFYSIKK
EEECCEEEEEECCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8196543; 9579061; 9384377; 7783616; 11744713 [H]