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The map label for this gene is ybbD [H]

Identifier: 23100661

GI number: 23100661

Start: 3336625

End: 3338214

Strand: Reverse

Name: ybbD [H]

Synonym: OB3206

Alternate gene names: 23100661

Gene position: 3338214-3336625 (Counterclockwise)

Preceding gene: 23100662

Following gene: 23100660

Centisome position: 91.95

GC content: 42.26

Gene sequence:

>1590_bases
ATGATTGAGAAAATAATAGGAGAACTGTTTGTAATCGGTTTTGATGGCAAAGTTGTCCCAAAATCGATCAAAAAGCTTAT
CCACGACTATCATATCGGTGGAATAATTCTTTTTACACGTAATATTGGGAGCCCTGATGAAGTACTTCGATTAACTGCTT
CTTTGCAGAAAGAAGCACGTGATGCGGGATATGAACGTCCACTGCTGATTTGTGTCGATCAAGAAAATGGTACAGTACGA
CGTCTTGGAGAAGGAACGACAATATTTCCTGGCGGGATGACGATTGGTGCAAGTGACAGTGAAGAGAACGCATATCAGGT
AGGTTATGCGAGTGGAACAGAGTTAAGAGCATTGGGGATTAATTGGAACTTAGCTCCTGTAGTAGATGTGAATGTAAATC
CGGATAATCCAGTTATAGGTGTTCGTTCTTACGGAGAGTCACCAGAACGTGTCGCTCGTTTAGCAAAAGCAGCGGTAAAA
GGTATGCAAGATGCAGGTGTTGTGACGACGCTCAAACATTTTCCTGGTCATGGTGATACAAAAGTGGATTCACATTTAGC
TTTGCCGGTTATCCCTCATAGCATAGAGCGATTGGAAGAAATCGAGTTACGACCTTTTCAAGCGTCTTTGGAATCTGATG
TGATTATGTCTGCTCATATCTACTTTCCAGCATTGGAACCGGAAGCAGATAAACCAGCTACATTATCCAAAGCAGTATTA
ACAGGATTGCTTCGAGAGAAATTAGGATATACCGGTTTAATTACGACGGATTGTATGGAAATGAATGCAATATCAGAAAC
AATTGGTACAGAGAAAGGGGTCGTAGCTGCGTTGCAAGCAGGCGTGGATCTAGCTATGGTATCACATACGTTACAACGGC
AAGTTGGTGCGCTTCAAGAAGTGAAGGCAGCGGTAGAGTCAGGCGAACTGAGTAGAGAATCTATATTAACCTCGGCAGAA
CGAATCAGGCGCGTTAAAGATACATATATCAATTGGAATAATACGAGTATAGATTCCGGTGCAAAGGTACCTTCTTTTGT
CGGTGGCAATGATCATCGTAAATTGGCGAAGGAAGCCTACCGACGAGGTGTGACAATGGTTTATAATCATGGGCTCATAC
CAATAGATAGTAGTAGCAATATAGTTGTTGTCACACCAGAAGCTAGTGCGCAGTCGGCAGCAGAGGATCCATCTCATGCA
ACTGTTCGTCTTTATGATGCAGTGCGTTCATATCAGCCGAATGCCAAAAACATAGCATTAACATCGGATTGGACAGAAGA
AGATATACATGAGCAAGTAGAACAGTGGAAGCAGTACGATGCGGTGATTTTCGGGGTGCAGTATTTAGCGCAGCAACCGA
TGCAACAGTTATTATTAGAAACACTTGCCGCAAGTGACATACCAGTAATCGCAATCGTTATGAGAAGCCCTTATGATGTA
GCATTATTACCAGAACTTCATACTTGTATATGTACGTATGAAGTCTCCTCTCCAGCTCTAGAAGTAGCTGTGAGTGCTGT
GTTCGGGGAAGAAGAAATCTTAGGTATGTTGCCAGTAACAATAAAATCAAACCAGATAAAAAGAATATAG

Upstream 100 bases:

>100_bases
GGCGGAAGTGTAACGGCTTATATATTAATGTGGGGAGTTTCGAAAACATTCGGAAAATATGAAGTAAATAATAAATGAAT
GCAGAAAGAGGTGGTAGTTC

Downstream 100 bases:

>100_bases
AGTAAGACCTGATGTCTATATTTGTATAACGCAGGTAGTGTAGAAGGATAAAGTAACAATTCATAGAATGGATGAATTGC
TGCTCGTTCCAAAAGAGATA

Product: beta-N-acetylhexosaminidase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 529; Mature: 529

Protein sequence:

>529_residues
MIEKIIGELFVIGFDGKVVPKSIKKLIHDYHIGGIILFTRNIGSPDEVLRLTASLQKEARDAGYERPLLICVDQENGTVR
RLGEGTTIFPGGMTIGASDSEENAYQVGYASGTELRALGINWNLAPVVDVNVNPDNPVIGVRSYGESPERVARLAKAAVK
GMQDAGVVTTLKHFPGHGDTKVDSHLALPVIPHSIERLEEIELRPFQASLESDVIMSAHIYFPALEPEADKPATLSKAVL
TGLLREKLGYTGLITTDCMEMNAISETIGTEKGVVAALQAGVDLAMVSHTLQRQVGALQEVKAAVESGELSRESILTSAE
RIRRVKDTYINWNNTSIDSGAKVPSFVGGNDHRKLAKEAYRRGVTMVYNHGLIPIDSSSNIVVVTPEASAQSAAEDPSHA
TVRLYDAVRSYQPNAKNIALTSDWTEEDIHEQVEQWKQYDAVIFGVQYLAQQPMQQLLLETLAASDIPVIAIVMRSPYDV
ALLPELHTCICTYEVSSPALEVAVSAVFGEEEILGMLPVTIKSNQIKRI

Sequences:

>Translated_529_residues
MIEKIIGELFVIGFDGKVVPKSIKKLIHDYHIGGIILFTRNIGSPDEVLRLTASLQKEARDAGYERPLLICVDQENGTVR
RLGEGTTIFPGGMTIGASDSEENAYQVGYASGTELRALGINWNLAPVVDVNVNPDNPVIGVRSYGESPERVARLAKAAVK
GMQDAGVVTTLKHFPGHGDTKVDSHLALPVIPHSIERLEEIELRPFQASLESDVIMSAHIYFPALEPEADKPATLSKAVL
TGLLREKLGYTGLITTDCMEMNAISETIGTEKGVVAALQAGVDLAMVSHTLQRQVGALQEVKAAVESGELSRESILTSAE
RIRRVKDTYINWNNTSIDSGAKVPSFVGGNDHRKLAKEAYRRGVTMVYNHGLIPIDSSSNIVVVTPEASAQSAAEDPSHA
TVRLYDAVRSYQPNAKNIALTSDWTEEDIHEQVEQWKQYDAVIFGVQYLAQQPMQQLLLETLAASDIPVIAIVMRSPYDV
ALLPELHTCICTYEVSSPALEVAVSAVFGEEEILGMLPVTIKSNQIKRI
>Mature_529_residues
MIEKIIGELFVIGFDGKVVPKSIKKLIHDYHIGGIILFTRNIGSPDEVLRLTASLQKEARDAGYERPLLICVDQENGTVR
RLGEGTTIFPGGMTIGASDSEENAYQVGYASGTELRALGINWNLAPVVDVNVNPDNPVIGVRSYGESPERVARLAKAAVK
GMQDAGVVTTLKHFPGHGDTKVDSHLALPVIPHSIERLEEIELRPFQASLESDVIMSAHIYFPALEPEADKPATLSKAVL
TGLLREKLGYTGLITTDCMEMNAISETIGTEKGVVAALQAGVDLAMVSHTLQRQVGALQEVKAAVESGELSRESILTSAE
RIRRVKDTYINWNNTSIDSGAKVPSFVGGNDHRKLAKEAYRRGVTMVYNHGLIPIDSSSNIVVVTPEASAQSAAEDPSHA
TVRLYDAVRSYQPNAKNIALTSDWTEEDIHEQVEQWKQYDAVIFGVQYLAQQPMQQLLLETLAASDIPVIAIVMRSPYDV
ALLPELHTCICTYEVSSPALEVAVSAVFGEEEILGMLPVTIKSNQIKRI

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=305, Percent_Identity=32.1311475409836, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1788453, Length=407, Percent_Identity=24.0786240786241, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: 3.2.1.52

Molecular weight: Translated: 57615; Mature: 57615

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEKIIGELFVIGFDGKVVPKSIKKLIHDYHIGGIILFTRNIGSPDEVLRLTASLQKEAR
CHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
DAGYERPLLICVDQENGTVRRLGEGTTIFPGGMTIGASDSEENAYQVGYASGTELRALGI
HCCCCCCEEEEEECCCCCEEECCCCCEECCCCEEECCCCCCCCCEEEEECCCCEEEEEEC
NWNLAPVVDVNVNPDNPVIGVRSYGESPERVARLAKAAVKGMQDAGVVTTLKHFPGHGDT
CCCCEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCC
KVDSHLALPVIPHSIERLEEIELRPFQASLESDVIMSAHIYFPALEPEADKPATLSKAVL
CCCCEEECCCCCHHHHHHHHHCCCCHHHCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHH
TGLLREKLGYTGLITTDCMEMNAISETIGTEKGVVAALQAGVDLAMVSHTLQRQVGALQE
HHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHH
VKAAVESGELSRESILTSAERIRRVKDTYINWNNTSIDSGAKVPSFVGGNDHRKLAKEAY
HHHHHHCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
RRGVTMVYNHGLIPIDSSSNIVVVTPEASAQSAAEDPSHATVRLYDAVRSYQPNAKNIAL
HCCCEEEEECCEEEECCCCCEEEECCCCCCCCCCCCCCCCEEEEEHHHHHCCCCCCEEEE
TSDWTEEDIHEQVEQWKQYDAVIFGVQYLAQQPMQQLLLETLAASDIPVIAIVMRSPYDV
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCE
ALLPELHTCICTYEVSSPALEVAVSAVFGEEEILGMLPVTIKSNQIKRI
EECCCCEEEEEEEECCCCHHHHHHHHHCCCHHHHEEECEEECCCCCCCC
>Mature Secondary Structure
MIEKIIGELFVIGFDGKVVPKSIKKLIHDYHIGGIILFTRNIGSPDEVLRLTASLQKEAR
CHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
DAGYERPLLICVDQENGTVRRLGEGTTIFPGGMTIGASDSEENAYQVGYASGTELRALGI
HCCCCCCEEEEEECCCCCEEECCCCCEECCCCEEECCCCCCCCCEEEEECCCCEEEEEEC
NWNLAPVVDVNVNPDNPVIGVRSYGESPERVARLAKAAVKGMQDAGVVTTLKHFPGHGDT
CCCCEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCC
KVDSHLALPVIPHSIERLEEIELRPFQASLESDVIMSAHIYFPALEPEADKPATLSKAVL
CCCCEEECCCCCHHHHHHHHHCCCCHHHCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHH
TGLLREKLGYTGLITTDCMEMNAISETIGTEKGVVAALQAGVDLAMVSHTLQRQVGALQE
HHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHH
VKAAVESGELSRESILTSAERIRRVKDTYINWNNTSIDSGAKVPSFVGGNDHRKLAKEAY
HHHHHHCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
RRGVTMVYNHGLIPIDSSSNIVVVTPEASAQSAAEDPSHATVRLYDAVRSYQPNAKNIAL
HCCCEEEEECCEEEECCCCCEEEECCCCCCCCCCCCCCCCEEEEEHHHHHCCCCCCEEEE
TSDWTEEDIHEQVEQWKQYDAVIFGVQYLAQQPMQQLLLETLAASDIPVIAIVMRSPYDV
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCE
ALLPELHTCICTYEVSSPALEVAVSAVFGEEEILGMLPVTIKSNQIKRI
EECCCCEEEEEEEECCCCHHHHHHHHHCCCHHHHEEECEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]