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The map label for this gene is yegW [H]

Identifier: 23100656

GI number: 23100656

Start: 3331840

End: 3332547

Strand: Reverse

Name: yegW [H]

Synonym: OB3201

Alternate gene names: 23100656

Gene position: 3332547-3331840 (Counterclockwise)

Preceding gene: 23100657

Following gene: 23100652

Centisome position: 91.79

GC content: 36.3

Gene sequence:

>708_bases
ATGAAACTGAATTTAAGGGAAGGTTCTTTATATATTCAAGTGAAAGATATCTTGAAAGAAAGAATTATTAATGGGCGATA
TAAGGTCAATGATCTAATTCCCTCTGAACCAGAATTAGAGAGAGAGTTTGAAGTGAGTAAGATAACTATACGCAAAGCGG
TAGAACAACTTGCTCAAGAAGGCTACGTAGAAAAAAGAAGTGGTATCGGGACAACGGTTTTGGCGAATCAAGTGGTTTCC
AAATTATCGAAAGGTCAGCGGTTCTCCGAATATTTAATCGGAGAAGGTTATCAATTGCGTAAGAAATTTATTGATTTAAC
AGTTGTGGAAGAACTCTCACCGCCGCTACATCAGTTGGACAGTAATGAAGTCTATTGTATTGAACGCCTGTATATCCTAA
ATGGGAGACCGTATATACACTTCAGACATTATATAGCTGGGCATATTACACTTCCAAAAGATCCGGAAGTATTTGTTAAT
TCCCTCTATGATATGTTGTATCAGCAAGGAATTCGCTTTTATCGATTTAAAGATGAATTTGGTGTATCTGTTCCTGAACA
AGAAGTTGCCGAACTGTTGGAAGTAGAGAAACAACCGTTATTACAACGTGAACGGTATTCCTATGATAGTAGAGACCGGC
TTGTGGAGTATTCATTTGCCTATTATAATACCGAGCTTCATAAATATATTGTTAATTTTAATATGTGA

Upstream 100 bases:

>100_bases
TTAGCACATACGACTTATGGTGATTCGCCGATTTCCTCAGATAAAGAAGTATGGGCATTAGTAAATAATCATGATCCCGA
TATAGAAAGGTAGATCAACC

Downstream 100 bases:

>100_bases
ATCAATATCATAATAAGATACGTTAAGTGAAAAGTCGAACAATTTTCTCTGTGTATCACTTCGGCCATTCGAATATTTAA
TTTCGGTTGTGAAGCCTATT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MKLNLREGSLYIQVKDILKERIINGRYKVNDLIPSEPELEREFEVSKITIRKAVEQLAQEGYVEKRSGIGTTVLANQVVS
KLSKGQRFSEYLIGEGYQLRKKFIDLTVVEELSPPLHQLDSNEVYCIERLYILNGRPYIHFRHYIAGHITLPKDPEVFVN
SLYDMLYQQGIRFYRFKDEFGVSVPEQEVAELLEVEKQPLLQRERYSYDSRDRLVEYSFAYYNTELHKYIVNFNM

Sequences:

>Translated_235_residues
MKLNLREGSLYIQVKDILKERIINGRYKVNDLIPSEPELEREFEVSKITIRKAVEQLAQEGYVEKRSGIGTTVLANQVVS
KLSKGQRFSEYLIGEGYQLRKKFIDLTVVEELSPPLHQLDSNEVYCIERLYILNGRPYIHFRHYIAGHITLPKDPEVFVN
SLYDMLYQQGIRFYRFKDEFGVSVPEQEVAELLEVEKQPLLQRERYSYDSRDRLVEYSFAYYNTELHKYIVNFNM
>Mature_235_residues
MKLNLREGSLYIQVKDILKERIINGRYKVNDLIPSEPELEREFEVSKITIRKAVEQLAQEGYVEKRSGIGTTVLANQVVS
KLSKGQRFSEYLIGEGYQLRKKFIDLTVVEELSPPLHQLDSNEVYCIERLYILNGRPYIHFRHYIAGHITLPKDPEVFVN
SLYDMLYQQGIRFYRFKDEFGVSVPEQEVAELLEVEKQPLLQRERYSYDSRDRLVEYSFAYYNTELHKYIVNFNM

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=227, Percent_Identity=24.2290748898678, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790540, Length=215, Percent_Identity=26.046511627907, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI87082252, Length=228, Percent_Identity=26.7543859649123, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1786950, Length=227, Percent_Identity=24.6696035242291, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27819; Mature: 27819

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNLREGSLYIQVKDILKERIINGRYKVNDLIPSEPELEREFEVSKITIRKAVEQLAQE
CEECCCCCEEEEEHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
GYVEKRSGIGTTVLANQVVSKLSKGQRFSEYLIGEGYQLRKKFIDLTVVEELSPPLHQLD
CCHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHCC
SNEVYCIERLYILNGRPYIHFRHYIAGHITLPKDPEVFVNSLYDMLYQQGIRFYRFKDEF
CCCEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEHHHH
GVSVPEQEVAELLEVEKQPLLQRERYSYDSRDRLVEYSFAYYNTELHKYIVNFNM
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEHHHHHHHHHHHHHEEECCC
>Mature Secondary Structure
MKLNLREGSLYIQVKDILKERIINGRYKVNDLIPSEPELEREFEVSKITIRKAVEQLAQE
CEECCCCCEEEEEHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
GYVEKRSGIGTTVLANQVVSKLSKGQRFSEYLIGEGYQLRKKFIDLTVVEELSPPLHQLD
CCHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHCC
SNEVYCIERLYILNGRPYIHFRHYIAGHITLPKDPEVFVNSLYDMLYQQGIRFYRFKDEF
CCCEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEHHHH
GVSVPEQEVAELLEVEKQPLLQRERYSYDSRDRLVEYSFAYYNTELHKYIVNFNM
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEHHHHHHHHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]