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The map label for this gene is ycdT [C]

Identifier: 23100550

GI number: 23100550

Start: 3219072

End: 3220334

Strand: Direct

Name: ycdT [C]

Synonym: OB3095

Alternate gene names: 23100550

Gene position: 3219072-3220334 (Clockwise)

Preceding gene: 23100541

Following gene: 23100555

Centisome position: 88.67

GC content: 33.49

Gene sequence:

>1263_bases
ATGTACCGGTTACGCTTATTTATACTATTTATTTTTGCTTCTGCAATAACTGTTGCATTTTTATCTGGACCAATTAATGT
TAGTATTTCTACTTATCTACCTGTGTTCGGGGTCTACTTCCTGTTTACAGCTTTATATTCCAACTTAAAAACAATTGTGA
GGACAGGAAATGTAAATGTAGACTATAGCATTTCTTATAATTTGTCTTTAGTTTTGTATACTGGGCCGCTAGGATTATTT
ATTTTTGAGGTCTTTAGTAGATTTTACGTTTATGTTATCCGCAAAAAAAATGGTACAGCAGATGAGGATGAATTTCTGCA
CACGTTTTATAATATAGGTGGTCCTACTCTTCTTAATGTAATTGGATACTTTTGCTTCTTTTCCATCTATCCCTATGTAG
AGCATCATACATTTGGTATCTGGCTTTTATTAATACCGATCGTTATCATCATTGATTTCTTATCGTCGTTATTACTACTA
ACGATATTTCATTTTGCAGGTAACATAAATACTGGACAAGATGCATGGGCTTTTATAAAAGGAAAAAGCATTTTAGATAC
GCTAAAAGGGGCTATTTCCAATGGGTTATTGTTTTTATTTCTAACAGAACAACATTGGGAAGCAATTATTGGGTTATTTA
TACTGAACTATTTAGTAAGCAGGTCAGCCGTTCTTCAATCTCGGACTCTCCAACATAAGATTGAAAGAGATCGATTTGAA
CAAATGGCTTATACTGACTTCCTTACTAAACTACATAATCGAACATACATGAATAAAATAATGAATGAACTCAATGAATC
AGAGCAGTTAGTAGGCATTGTCGTAACAGATATCGATACTTTTAAACGAATTAATGATACATTTAACCACAACGTGGGGG
ATAAAGTAATTCAACATTTTGCCAATCATATTAAAAGCAAACTTAACGAACATGATTATCTATTTCGCAGTGGCGGAGAA
GAATTCACAATAATCCTGACTAATCGGACTTACGAACAGTGCCAAGAACTAGTTTTGCTTTTAAAGGAAGAAGTGGCACA
AACAAGTGCACAAGCAGAATATAGAGGAGATACTATTCACGTAGACTACACTGCTACATTTGGTCTCAATTACTACGATT
GTGGGGAAAAGAGCGATATTCGAAAAGCATATATTCAAGCAGATGAGCTCCTAATTAAAGCGAAAAATAACGGTAAAAAT
AAAGTTTATATAGTTAATAGTACCCGTACGAACACTCAAGAAGATCTAGATATTATTGAGTGA

Upstream 100 bases:

>100_bases
TAATTTCTTACAATTCACATCTTTCTATGCTATTATATTTAAAATGGGTATAATAGCCTATACGCAAGCTGATAAAATAA
CTATGGAAAGGATTTAATCT

Downstream 100 bases:

>100_bases
AACATAAGAAGTCATACGTAGCAATAAAGAAAATGGACAAAACACGGTCATTTAAAACTCGCTTCAGCAATACGCCACTT
ATCTTAAGTGAATTTGTCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MYRLRLFILFIFASAITVAFLSGPINVSISTYLPVFGVYFLFTALYSNLKTIVRTGNVNVDYSISYNLSLVLYTGPLGLF
IFEVFSRFYVYVIRKKNGTADEDEFLHTFYNIGGPTLLNVIGYFCFFSIYPYVEHHTFGIWLLLIPIVIIIDFLSSLLLL
TIFHFAGNINTGQDAWAFIKGKSILDTLKGAISNGLLFLFLTEQHWEAIIGLFILNYLVSRSAVLQSRTLQHKIERDRFE
QMAYTDFLTKLHNRTYMNKIMNELNESEQLVGIVVTDIDTFKRINDTFNHNVGDKVIQHFANHIKSKLNEHDYLFRSGGE
EFTIILTNRTYEQCQELVLLLKEEVAQTSAQAEYRGDTIHVDYTATFGLNYYDCGEKSDIRKAYIQADELLIKAKNNGKN
KVYIVNSTRTNTQEDLDIIE

Sequences:

>Translated_420_residues
MYRLRLFILFIFASAITVAFLSGPINVSISTYLPVFGVYFLFTALYSNLKTIVRTGNVNVDYSISYNLSLVLYTGPLGLF
IFEVFSRFYVYVIRKKNGTADEDEFLHTFYNIGGPTLLNVIGYFCFFSIYPYVEHHTFGIWLLLIPIVIIIDFLSSLLLL
TIFHFAGNINTGQDAWAFIKGKSILDTLKGAISNGLLFLFLTEQHWEAIIGLFILNYLVSRSAVLQSRTLQHKIERDRFE
QMAYTDFLTKLHNRTYMNKIMNELNESEQLVGIVVTDIDTFKRINDTFNHNVGDKVIQHFANHIKSKLNEHDYLFRSGGE
EFTIILTNRTYEQCQELVLLLKEEVAQTSAQAEYRGDTIHVDYTATFGLNYYDCGEKSDIRKAYIQADELLIKAKNNGKN
KVYIVNSTRTNTQEDLDIIE
>Mature_420_residues
MYRLRLFILFIFASAITVAFLSGPINVSISTYLPVFGVYFLFTALYSNLKTIVRTGNVNVDYSISYNLSLVLYTGPLGLF
IFEVFSRFYVYVIRKKNGTADEDEFLHTFYNIGGPTLLNVIGYFCFFSIYPYVEHHTFGIWLLLIPIVIIIDFLSSLLLL
TIFHFAGNINTGQDAWAFIKGKSILDTLKGAISNGLLFLFLTEQHWEAIIGLFILNYLVSRSAVLQSRTLQHKIERDRFE
QMAYTDFLTKLHNRTYMNKIMNELNESEQLVGIVVTDIDTFKRINDTFNHNVGDKVIQHFANHIKSKLNEHDYLFRSGGE
EFTIILTNRTYEQCQELVLLLKEEVAQTSAQAEYRGDTIHVDYTATFGLNYYDCGEKSDIRKAYIQADELLIKAKNNGKN
KVYIVNSTRTNTQEDLDIIE

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=169, Percent_Identity=31.9526627218935, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87082007, Length=199, Percent_Identity=29.1457286432161, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI145693134, Length=181, Percent_Identity=27.6243093922652, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI87081881, Length=179, Percent_Identity=29.0502793296089, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1787802, Length=164, Percent_Identity=27.4390243902439, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87081974, Length=214, Percent_Identity=25.7009345794392, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788085, Length=173, Percent_Identity=28.3236994219653, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787056, Length=161, Percent_Identity=30.4347826086957, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 48376; Mature: 48376

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRLRLFILFIFASAITVAFLSGPINVSISTYLPVFGVYFLFTALYSNLKTIVRTGNVNV
CHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
DYSISYNLSLVLYTGPLGLFIFEVFSRFYVYVIRKKNGTADEDEFLHTFYNIGGPTLLNV
EEEEEEEEEEEEEECCHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHCCCHHHHHH
IGYFCFFSIYPYVEHHTFGIWLLLIPIVIIIDFLSSLLLLTIFHFAGNINTGQDAWAFIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
GKSILDTLKGAISNGLLFLFLTEQHWEAIIGLFILNYLVSRSAVLQSRTLQHKIERDRFE
CHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QMAYTDFLTKLHNRTYMNKIMNELNESEQLVGIVVTDIDTFKRINDTFNHNVGDKVIQHF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHCCCHHHHHHHHH
ANHIKSKLNEHDYLFRSGGEEFTIILTNRTYEQCQELVLLLKEEVAQTSAQAEYRGDTIH
HHHHHHHCCCCCCHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
VDYTATFGLNYYDCGEKSDIRKAYIQADELLIKAKNNGKNKVYIVNSTRTNTQEDLDIIE
EEEEEEECCCEECCCCCHHHHHHHHHHHHEEEEECCCCCCEEEEEECCCCCCHHCCCCCC
>Mature Secondary Structure
MYRLRLFILFIFASAITVAFLSGPINVSISTYLPVFGVYFLFTALYSNLKTIVRTGNVNV
CHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
DYSISYNLSLVLYTGPLGLFIFEVFSRFYVYVIRKKNGTADEDEFLHTFYNIGGPTLLNV
EEEEEEEEEEEEEECCHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHCCCHHHHHH
IGYFCFFSIYPYVEHHTFGIWLLLIPIVIIIDFLSSLLLLTIFHFAGNINTGQDAWAFIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
GKSILDTLKGAISNGLLFLFLTEQHWEAIIGLFILNYLVSRSAVLQSRTLQHKIERDRFE
CHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QMAYTDFLTKLHNRTYMNKIMNELNESEQLVGIVVTDIDTFKRINDTFNHNVGDKVIQHF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHCCCHHHHHHHHH
ANHIKSKLNEHDYLFRSGGEEFTIILTNRTYEQCQELVLLLKEEVAQTSAQAEYRGDTIH
HHHHHHHCCCCCCHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
VDYTATFGLNYYDCGEKSDIRKAYIQADELLIKAKNNGKNKVYIVNSTRTNTQEDLDIIE
EEEEEEECCCEECCCCCHHHHHHHHHHHHEEEEECCCCCCEEEEEECCCCCCHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA