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The map label for this gene is dppB [H]

Identifier: 23100425

GI number: 23100425

Start: 3079680

End: 3080618

Strand: Reverse

Name: dppB [H]

Synonym: OB2970

Alternate gene names: 23100425

Gene position: 3080618-3079680 (Counterclockwise)

Preceding gene: 23100426

Following gene: 23100424

Centisome position: 84.85

GC content: 37.27

Gene sequence:

>939_bases
TTGCTGAAATACATATTAAAAAGATTAGCCATTATGGCTGTAACGCTTTGGATTATTATTACACTTACCTTTGTACTAAT
GACAAGTATACCAGGTTCACCATTTAACAGCGATCAGTCTTCCAATGAAACAATTCGTGCAAACCTAGAAGCACATTATA
ATCTAGATAAGCCACCACATGTACAATATTTACTCTATTTAAAATCGATTGTTACGTTTGAATTTGGACCGTCCATTAAA
CAACCAAATCAAACTGTTAACGATTTATTATCGAGAGGATTTCCGATTTCTTTTGAGCTAGGGATAGTTACCATCGTTGT
CGCAGTTATTTCAGGAATCTTAATAGGTATTGTCGCTGCGTTACGACATAATGGAATATTAGATTATTTAACGATGGGGA
TAGCGGTATTAGGCATCTCTATTCCAAACTTTATTTTAGCTACATTACTTATACAGCAACTTGCAGTTAATTGGGAGATA
TTTCCGACTGCGACATGGAAAAGTCCAGCACATATGGTTCTGCCTGTATTAGCGTTAGCAACAGGTCCGATGGCAATTAT
CGCGAGACTTACTCGCTCAACCATGTTGGAAGTTCTTACACAGGACTACATAAAAATGGCCAAGGCAAAAGGGTTATCCC
CATGGAAAATCGTTTTTAAGCATGCACTTCGAAATGCGCTAATGCCTGTCGTTACGATCATGGGAACATTATTAGCGGGT
ATTTTGACGGGAACATTTGTCATTGAGCAGATATTTGCGATCCCGGGAATGGGTAAATATTTTGTGGAAAGTATTAATCA
ACGTGATTATCCAGTAATTATGGGAACGACGGTATTCTATAGTGCTTTTCTAATTTTTATGCTTTTTCTTGTAGATATTG
CATATGGAATCCTCGATCCTCGAATAAAAATGAATAGTAAGGGAGGGGAAGTGTCATGA

Upstream 100 bases:

>100_bases
CTTATCAAGCCATGTTAGTTATGACTGAACTGGCAATGCATACTACATTCTCTTAAACAAAACAGACAGAGAACAGAAAA
ATAATTAGGGGGTGCCTCGT

Downstream 100 bases:

>100_bases
GTTCAAATGAAAACAATACACATAAAACCCCTTCTGCAGTTCCTGATGAATGGTTTGCATGGAAAGGAAAAGATACGTTG
GAAGCAGAGTCTGTTTCCAG

Product: dipeptide ABC transporter permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MLKYILKRLAIMAVTLWIIITLTFVLMTSIPGSPFNSDQSSNETIRANLEAHYNLDKPPHVQYLLYLKSIVTFEFGPSIK
QPNQTVNDLLSRGFPISFELGIVTIVVAVISGILIGIVAALRHNGILDYLTMGIAVLGISIPNFILATLLIQQLAVNWEI
FPTATWKSPAHMVLPVLALATGPMAIIARLTRSTMLEVLTQDYIKMAKAKGLSPWKIVFKHALRNALMPVVTIMGTLLAG
ILTGTFVIEQIFAIPGMGKYFVESINQRDYPVIMGTTVFYSAFLIFMLFLVDIAYGILDPRIKMNSKGGEVS

Sequences:

>Translated_312_residues
MLKYILKRLAIMAVTLWIIITLTFVLMTSIPGSPFNSDQSSNETIRANLEAHYNLDKPPHVQYLLYLKSIVTFEFGPSIK
QPNQTVNDLLSRGFPISFELGIVTIVVAVISGILIGIVAALRHNGILDYLTMGIAVLGISIPNFILATLLIQQLAVNWEI
FPTATWKSPAHMVLPVLALATGPMAIIARLTRSTMLEVLTQDYIKMAKAKGLSPWKIVFKHALRNALMPVVTIMGTLLAG
ILTGTFVIEQIFAIPGMGKYFVESINQRDYPVIMGTTVFYSAFLIFMLFLVDIAYGILDPRIKMNSKGGEVS
>Mature_312_residues
MLKYILKRLAIMAVTLWIIITLTFVLMTSIPGSPFNSDQSSNETIRANLEAHYNLDKPPHVQYLLYLKSIVTFEFGPSIK
QPNQTVNDLLSRGFPISFELGIVTIVVAVISGILIGIVAALRHNGILDYLTMGIAVLGISIPNFILATLLIQQLAVNWEI
FPTATWKSPAHMVLPVLALATGPMAIIARLTRSTMLEVLTQDYIKMAKAKGLSPWKIVFKHALRNALMPVVTIMGTLLAG
ILTGTFVIEQIFAIPGMGKYFVESINQRDYPVIMGTTVFYSAFLIFMLFLVDIAYGILDPRIKMNSKGGEVS

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane. Is expressed to facilitate adaptation to nutrient deficiency conditions [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=305, Percent_Identity=40.9836065573771, Blast_Score=247, Evalue=6e-67,
Organism=Escherichia coli, GI1789965, Length=337, Percent_Identity=34.7181008902077, Blast_Score=212, Evalue=3e-56,
Organism=Escherichia coli, GI1787053, Length=309, Percent_Identity=37.8640776699029, Blast_Score=200, Evalue=9e-53,
Organism=Escherichia coli, GI1789888, Length=311, Percent_Identity=32.475884244373, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1787761, Length=323, Percent_Identity=33.1269349845201, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1788504, Length=365, Percent_Identity=27.1232876712329, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI1787550, Length=269, Percent_Identity=29.368029739777, Blast_Score=119, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34460; Mature: 34460

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKYILKRLAIMAVTLWIIITLTFVLMTSIPGSPFNSDQSSNETIRANLEAHYNLDKPPH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECHHEECCCCCCH
VQYLLYLKSIVTFEFGPSIKQPNQTVNDLLSRGFPISFELGIVTIVVAVISGILIGIVAA
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHH
LRHNGILDYLTMGIAVLGISIPNFILATLLIQQLAVNWEIFPTATWKSPAHMVLPVLALA
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHH
TGPMAIIARLTRSTMLEVLTQDYIKMAKAKGLSPWKIVFKHALRNALMPVVTIMGTLLAG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILTGTFVIEQIFAIPGMGKYFVESINQRDYPVIMGTTVFYSAFLIFMLFLVDIAYGILDP
HHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCC
RIKMNSKGGEVS
CEEECCCCCCCC
>Mature Secondary Structure
MLKYILKRLAIMAVTLWIIITLTFVLMTSIPGSPFNSDQSSNETIRANLEAHYNLDKPPH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECHHEECCCCCCH
VQYLLYLKSIVTFEFGPSIKQPNQTVNDLLSRGFPISFELGIVTIVVAVISGILIGIVAA
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHH
LRHNGILDYLTMGIAVLGISIPNFILATLLIQQLAVNWEIFPTATWKSPAHMVLPVLALA
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHH
TGPMAIIARLTRSTMLEVLTQDYIKMAKAKGLSPWKIVFKHALRNALMPVVTIMGTLLAG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILTGTFVIEQIFAIPGMGKYFVESINQRDYPVIMGTTVFYSAFLIFMLFLVDIAYGILDP
HHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCC
RIKMNSKGGEVS
CEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]