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The map label for this gene is rfbA [H]

Identifier: 23100379

GI number: 23100379

Start: 3023541

End: 3024323

Strand: Reverse

Name: rfbA [H]

Synonym: OB2924

Alternate gene names: 23100379

Gene position: 3024323-3023541 (Counterclockwise)

Preceding gene: 23100380

Following gene: 23100378

Centisome position: 83.3

GC content: 30.65

Gene sequence:

>783_bases
ATGAAAAGTTATATTCATGAAATGTTACGTAGAAAAGATTTATTGTACTACTTAGTAAAATCTGGATTAAAAGCTGAGCA
CAGAAATAGTTATTTAGGGTATTTTTGGTGGCTATTAGATCCACTATTAAACGTAATGGTGTATTACTTCTTAGTAATTA
TTATATTAGGAAGAGGAGACGATCATCCAAATTATCCTTTATTCCTTGTTGTTGGATTAGTCGCTTGGCGTTGGGTATCT
ACAAGTATTAATTCTTCTTCTAAATCTATTTTAAGATATAGTTCCATTATCAATCAGGTATCCTTACCGAAGGCCCTGTT
CCCAATATCGTTTACCCTAACCCAATTATTTAATTTTGCATTTGGACTTGTTGTAATTGCGATATTTTTAGCTGTTTATG
GAATTATGCCTGATTGGCATATTGTGTACTTACCAATGATTATATTTATTCAGTTAGTGTTTCAATTAATGTTGGGTCTA
ATTTTAGGTTATATCACAATATTTGTCAGAGACTTAGAAAATGTACTTACTTATGTTACTCGAGTATTTTTCTATGCGTC
ACCAATTATTTGGGTAGGAGGACGTCTGCCAGATGACTGGAGCTTTTTTGTAGATTATAATCCAATTGCAATTTTAGTAA
CTTCTTATCGAGATGTTTTAATTGACCATCAAGTACCAAATTTAATTGGACTCGCAATTATATTTGCTCTTAGTGTGATT
TTAGGAGTTGTAATGATTAGACACTATAGTAAAAATGAACATAAAATTATTAAGGCTTTATAA

Upstream 100 bases:

>100_bases
AGTTTTATAATATAAAGGTTAGGAATTATTTTTCTTAACAAGTTATTAACAGCTTATGACAAATTTTTGTTTAAGTTTAG
TAGGCGGTGTCATTGTTAAA

Downstream 100 bases:

>100_bases
AAAAGAGGGTTTTTTATGGTAGAACATAATGACAAGCAAATTAAACATCAAAATGCAGTAATTAATTCTAAAAATATTGG
TGTTTCATTTGATAATGATA

Product: teichoic acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MKSYIHEMLRRKDLLYYLVKSGLKAEHRNSYLGYFWWLLDPLLNVMVYYFLVIIILGRGDDHPNYPLFLVVGLVAWRWVS
TSINSSSKSILRYSSIINQVSLPKALFPISFTLTQLFNFAFGLVVIAIFLAVYGIMPDWHIVYLPMIIFIQLVFQLMLGL
ILGYITIFVRDLENVLTYVTRVFFYASPIIWVGGRLPDDWSFFVDYNPIAILVTSYRDVLIDHQVPNLIGLAIIFALSVI
LGVVMIRHYSKNEHKIIKAL

Sequences:

>Translated_260_residues
MKSYIHEMLRRKDLLYYLVKSGLKAEHRNSYLGYFWWLLDPLLNVMVYYFLVIIILGRGDDHPNYPLFLVVGLVAWRWVS
TSINSSSKSILRYSSIINQVSLPKALFPISFTLTQLFNFAFGLVVIAIFLAVYGIMPDWHIVYLPMIIFIQLVFQLMLGL
ILGYITIFVRDLENVLTYVTRVFFYASPIIWVGGRLPDDWSFFVDYNPIAILVTSYRDVLIDHQVPNLIGLAIIFALSVI
LGVVMIRHYSKNEHKIIKAL
>Mature_260_residues
MKSYIHEMLRRKDLLYYLVKSGLKAEHRNSYLGYFWWLLDPLLNVMVYYFLVIIILGRGDDHPNYPLFLVVGLVAWRWVS
TSINSSSKSILRYSSIINQVSLPKALFPISFTLTQLFNFAFGLVVIAIFLAVYGIMPDWHIVYLPMIIFIQLVFQLMLGL
ILGYITIFVRDLENVLTYVTRVFFYASPIIWVGGRLPDDWSFFVDYNPIAILVTSYRDVLIDHQVPNLIGLAIIFALSVI
LGVVMIRHYSKNEHKIIKAL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 30164; Mature: 30164

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCCCCHHHHHHCC
>Mature Secondary Structure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HHHHHHHHCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]