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The map label for this gene is yibD [C]

Identifier: 23100377

GI number: 23100377

Start: 3019970

End: 3021907

Strand: Reverse

Name: yibD [C]

Synonym: OB2922

Alternate gene names: 23100377

Gene position: 3021907-3019970 (Counterclockwise)

Preceding gene: 23100378

Following gene: 23100376

Centisome position: 83.24

GC content: 35.35

Gene sequence:

>1938_bases
TTGTCAAAAGTAAAAAGAATAATAGAAGGTCCTGTTGATTGGTTTTTATATACTGTAATGGGGGAGAAACAACGGAAGTT
TATATTAAATTCCATTAATGATAAGCAAAAAGAGAAATTAAAGCAACTATTGTTAGGAAAAAAGAATAGGCAGAGACAAG
AGTTAAAACAAATAAAGTTCCATCTATATAATTTAGGATTTATAGATCAAGGTCTTCAAGAATTAAAAAATTATATGCAA
AATGTAGAGTCTCCTTACTTTAAACGTATGTCGGCATGGGAACTAGTGCTATGGCATGCGAATCAATATAGTGAAACAGA
TGCGAATAAAGCACTTGATTACATGAAAACAGTAGAGGATGGGGAATCAGACGCAGATCAATTAAGAAGGATTGCTATTA
TAAAGGCTGAACTCCTTGATATGATTGGTCAACCTGAAGAAGGTATTACGGTTATACAAAAAGCATTAGAAAATGGTGCT
CACCCAGACCTTTATTTAGCAATGGCAAATTTAAAATCAGATTTACGTGATCGATTTGAATGGGTGAATCACGCTTTTGC
AATGTACGATTTGAATGAGATAGAAATTGATGTTCATGCAGAACAAATATATGATTCATTGCAAACCAAAGGAACGTTAT
CGTCAAAAGATAACGGCCCGTTAGTATCTGTAATCATTCCAGCATACAATGCAGAAGATGGTATACAGGTTGCGATAGAG
TCGATTCTTTCTCAAAGCTGGACTAACTTAGAACTATTGATTGTAGATGACTGTAGTCCAGATGATACATTTAATGTAAT
TAAAGCATACGAGCAAAAAGACTCAAGAGTAAAAGTATTTCAAACACCAAGTAACAGCGGTCCATATGTCGCTAGAAATA
TCGCTTTACAACATGCAAAAGGTGATTTTGTTACGATAAATGATTCAGATGATTGGTCACATGCTTCAAAAATTGAATTA
CAAGCACAACATTTAGTGGAGCATGACCAGATCATCGCAAATACTTCAGAACATGCTCGAATAACAGAAGATATGAAATT
ATACAGAAGAGGAACTCCAGGAAAATATATTTTTCCAAACATGTCATCGATTATGTTTAGAAGGGAACCTGTATTACAAA
AGATTGGTTACTGGGACAGTGTTCGCTTTGCTGCTGATGGAGAATTTAAGCGCAGGTTGCTAAAACAGTTTGGAACAGGT
GCTTACGTCGATTTAAATACAGGTCCATTATCATTGCCAAGACAATCAGTTACTTCATTAACAGGTAGCTCTGCATTTGG
TTATAATGGATTTTTTATGGGTGTGCGTAAAGAGTATGTAGAGTCATTAGAGTATTATCATCAAGATGCTGAAAACTTGT
ATTATCCTTATCCGATGGTGAACCGTCCCTACCCAGTTCCGGAACCAATGTGGCCAAAAAGAGAAGAAAAAACCAATGGT
GTCCGCTCATTTGATATCGTCATTGCAGCTGATTACAGGCAGTTAGATGACTCGGAGATATCCATTTTTAATCAATTACT
AGATGAGAATTCTCATTCTAAGATTGGTTTAGCCCAAGTCTTCCATTACGACTTAAATTTAAGAGCAAAAATAGAGGAAC
GAGTGAGAAACAAAGTAGATGGAGATCATATTCATTTTATCGTGTACGGTGAAAAAATCCACACGAAAACCTTAATTTTA
ATAGACCCAGCTACATTCTTGATTACTCAAAAATATATTCCCGAGATAACAACAGACCATTTAAATGCAATCATAACAAA
CATAGTTGATGATGAAGCCAGTGATGATGTAACTCATTTAACAGCGCATTTAACAGATTATTTTCAAGCAAGCGTCGTGT
GGTATGCGATAAACAACGAAGTGCAGCAGTCTCTTAAGATGATACCAAGCGAATCATATGGAGGAGTTTGGGATAAAGGA
TGTATCAGTAATGACTAA

Upstream 100 bases:

>100_bases
AACAGGGTAGTTAAGAAGACTGTAAAAAGGTCCAATACGAATAATTAAAATATTACCTCTTACAGTATCAATGAATCAAT
GCAAAATGGTGGTGGCTACA

Downstream 100 bases:

>100_bases
AGATACGGATAATTATAATCAAGATCTTCTTCATTCACGTGTAAAACAAATGGAACAGGAATTGCATGTTCTTAAAAACA
AAAATTCATTAGTAGAAGAT

Product: truncated glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 645; Mature: 644

Protein sequence:

>645_residues
MSKVKRIIEGPVDWFLYTVMGEKQRKFILNSINDKQKEKLKQLLLGKKNRQRQELKQIKFHLYNLGFIDQGLQELKNYMQ
NVESPYFKRMSAWELVLWHANQYSETDANKALDYMKTVEDGESDADQLRRIAIIKAELLDMIGQPEEGITVIQKALENGA
HPDLYLAMANLKSDLRDRFEWVNHAFAMYDLNEIEIDVHAEQIYDSLQTKGTLSSKDNGPLVSVIIPAYNAEDGIQVAIE
SILSQSWTNLELLIVDDCSPDDTFNVIKAYEQKDSRVKVFQTPSNSGPYVARNIALQHAKGDFVTINDSDDWSHASKIEL
QAQHLVEHDQIIANTSEHARITEDMKLYRRGTPGKYIFPNMSSIMFRREPVLQKIGYWDSVRFAADGEFKRRLLKQFGTG
AYVDLNTGPLSLPRQSVTSLTGSSAFGYNGFFMGVRKEYVESLEYYHQDAENLYYPYPMVNRPYPVPEPMWPKREEKTNG
VRSFDIVIAADYRQLDDSEISIFNQLLDENSHSKIGLAQVFHYDLNLRAKIEERVRNKVDGDHIHFIVYGEKIHTKTLIL
IDPATFLITQKYIPEITTDHLNAIITNIVDDEASDDVTHLTAHLTDYFQASVVWYAINNEVQQSLKMIPSESYGGVWDKG
CISND

Sequences:

>Translated_645_residues
MSKVKRIIEGPVDWFLYTVMGEKQRKFILNSINDKQKEKLKQLLLGKKNRQRQELKQIKFHLYNLGFIDQGLQELKNYMQ
NVESPYFKRMSAWELVLWHANQYSETDANKALDYMKTVEDGESDADQLRRIAIIKAELLDMIGQPEEGITVIQKALENGA
HPDLYLAMANLKSDLRDRFEWVNHAFAMYDLNEIEIDVHAEQIYDSLQTKGTLSSKDNGPLVSVIIPAYNAEDGIQVAIE
SILSQSWTNLELLIVDDCSPDDTFNVIKAYEQKDSRVKVFQTPSNSGPYVARNIALQHAKGDFVTINDSDDWSHASKIEL
QAQHLVEHDQIIANTSEHARITEDMKLYRRGTPGKYIFPNMSSIMFRREPVLQKIGYWDSVRFAADGEFKRRLLKQFGTG
AYVDLNTGPLSLPRQSVTSLTGSSAFGYNGFFMGVRKEYVESLEYYHQDAENLYYPYPMVNRPYPVPEPMWPKREEKTNG
VRSFDIVIAADYRQLDDSEISIFNQLLDENSHSKIGLAQVFHYDLNLRAKIEERVRNKVDGDHIHFIVYGEKIHTKTLIL
IDPATFLITQKYIPEITTDHLNAIITNIVDDEASDDVTHLTAHLTDYFQASVVWYAINNEVQQSLKMIPSESYGGVWDKG
CISND
>Mature_644_residues
SKVKRIIEGPVDWFLYTVMGEKQRKFILNSINDKQKEKLKQLLLGKKNRQRQELKQIKFHLYNLGFIDQGLQELKNYMQN
VESPYFKRMSAWELVLWHANQYSETDANKALDYMKTVEDGESDADQLRRIAIIKAELLDMIGQPEEGITVIQKALENGAH
PDLYLAMANLKSDLRDRFEWVNHAFAMYDLNEIEIDVHAEQIYDSLQTKGTLSSKDNGPLVSVIIPAYNAEDGIQVAIES
ILSQSWTNLELLIVDDCSPDDTFNVIKAYEQKDSRVKVFQTPSNSGPYVARNIALQHAKGDFVTINDSDDWSHASKIELQ
AQHLVEHDQIIANTSEHARITEDMKLYRRGTPGKYIFPNMSSIMFRREPVLQKIGYWDSVRFAADGEFKRRLLKQFGTGA
YVDLNTGPLSLPRQSVTSLTGSSAFGYNGFFMGVRKEYVESLEYYHQDAENLYYPYPMVNRPYPVPEPMWPKREEKTNGV
RSFDIVIAADYRQLDDSEISIFNQLLDENSHSKIGLAQVFHYDLNLRAKIEERVRNKVDGDHIHFIVYGEKIHTKTLILI
DPATFLITQKYIPEITTDHLNAIITNIVDDEASDDVTHLTAHLTDYFQASVVWYAINNEVQQSLKMIPSESYGGVWDKGC
ISND

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=115, Percent_Identity=33.9130434782609, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1788372, Length=122, Percent_Identity=34.4262295081967, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 74141; Mature: 74009

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: PS00131 CARBOXYPEPT_SER_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKVKRIIEGPVDWFLYTVMGEKQRKFILNSINDKQKEKLKQLLLGKKNRQRQELKQIKF
CCHHHHHHHCCHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
HLYNLGFIDQGLQELKNYMQNVESPYFKRMSAWELVLWHANQYSETDANKALDYMKTVED
HHHCCCHHHHHHHHHHHHHHHCCCHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHCC
GESDADQLRRIAIIKAELLDMIGQPEEGITVIQKALENGAHPDLYLAMANLKSDLRDRFE
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHEEEHHHHHHHHHHHHH
WVNHAFAMYDLNEIEIDVHAEQIYDSLQTKGTLSSKDNGPLVSVIIPAYNAEDGIQVAIE
HHHHHHHEEECCEEEEEEEHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHH
SILSQSWTNLELLIVDDCSPDDTFNVIKAYEQKDSRVKVFQTPSNSGPYVARNIALQHAK
HHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEEEEECC
GDFVTINDSDDWSHASKIELQAQHLVEHDQIIANTSEHARITEDMKLYRRGTPGKYIFPN
CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEECCC
MSSIMFRREPVLQKIGYWDSVRFAADGEFKRRLLKQFGTGAYVDLNTGPLSLPRQSVTSL
HHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHC
TGSSAFGYNGFFMGVRKEYVESLEYYHQDAENLYYPYPMVNRPYPVPEPMWPKREEKTNG
CCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCHHHCCC
VRSFDIVIAADYRQLDDSEISIFNQLLDENSHSKIGLAQVFHYDLNLRAKIEERVRNKVD
CEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCHHHHEEECCCCHHHHHHHHHHCCC
GDHIHFIVYGEKIHTKTLILIDPATFLITQKYIPEITTDHLNAIITNIVDDEASDDVTHL
CCEEEEEEECCEEEEEEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHH
TAHLTDYFQASVVWYAINNEVQQSLKMIPSESYGGVWDKGCISND
HHHHHHHHHHEEEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SKVKRIIEGPVDWFLYTVMGEKQRKFILNSINDKQKEKLKQLLLGKKNRQRQELKQIKF
CHHHHHHHCCHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
HLYNLGFIDQGLQELKNYMQNVESPYFKRMSAWELVLWHANQYSETDANKALDYMKTVED
HHHCCCHHHHHHHHHHHHHHHCCCHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHCC
GESDADQLRRIAIIKAELLDMIGQPEEGITVIQKALENGAHPDLYLAMANLKSDLRDRFE
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHEEEHHHHHHHHHHHHH
WVNHAFAMYDLNEIEIDVHAEQIYDSLQTKGTLSSKDNGPLVSVIIPAYNAEDGIQVAIE
HHHHHHHEEECCEEEEEEEHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHH
SILSQSWTNLELLIVDDCSPDDTFNVIKAYEQKDSRVKVFQTPSNSGPYVARNIALQHAK
HHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEEEEECC
GDFVTINDSDDWSHASKIELQAQHLVEHDQIIANTSEHARITEDMKLYRRGTPGKYIFPN
CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEECCC
MSSIMFRREPVLQKIGYWDSVRFAADGEFKRRLLKQFGTGAYVDLNTGPLSLPRQSVTSL
HHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHC
TGSSAFGYNGFFMGVRKEYVESLEYYHQDAENLYYPYPMVNRPYPVPEPMWPKREEKTNG
CCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCHHHCCC
VRSFDIVIAADYRQLDDSEISIFNQLLDENSHSKIGLAQVFHYDLNLRAKIEERVRNKVD
CEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCHHHHEEECCCCHHHHHHHHHHCCC
GDHIHFIVYGEKIHTKTLILIDPATFLITQKYIPEITTDHLNAIITNIVDDEASDDVTHL
CCEEEEEEECCEEEEEEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHH
TAHLTDYFQASVVWYAINNEVQQSLKMIPSESYGGVWDKGCISND
HHHHHHHHHHEEEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]