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The map label for this gene is ydhC [H]

Identifier: 23100335

GI number: 23100335

Start: 2966145

End: 2966786

Strand: Reverse

Name: ydhC [H]

Synonym: OB2880

Alternate gene names: 23100335

Gene position: 2966786-2966145 (Counterclockwise)

Preceding gene: 23100336

Following gene: 23100334

Centisome position: 81.72

GC content: 38.16

Gene sequence:

>642_bases
ATGGGGAAGATTATTAAGTCAGAATCCCTGCATTTACAAGCCTATAATTTAATCAAAGAATCAATTATGGAAGGTAATTT
AAAGCCTGATGAACGTGTCGTAGAAGCGAAGATTGCAAGTAAGTTAGGCACTAGCAGGGGAACAGTAAGAGAAGCGATTC
GGATGTTAACGCAGGATGGCTTATTAATATATAACGACGGTTTCGTAAAGGTGTATGAGCCAACAGTAGAGGATGTTGTG
GATATATTTGAGTGCAGGGAAAGTCTTGAAGTGTTAGCAGTCCGCCTTGCAATTAAGAATCTGACTGAAGAAGTGAAGGA
AAGCTTAGCTAATAATGTACAAGAAACGAAAAAAGTGAAACCGGATTCTCCAGAGCTTGGTCAGCTGGATCAGCAATTCC
ATACAATTATTACCGAAGCTTCTAACAATGGACAACTGATTAAATTGCTGGAAGTTATCAAAGTTAAAACGCATTATATG
CGAAAAAGTATGGTCGGGGGATCGTTTTACCCTTCCTTTATTGAAGACCACGAACAAATTTTTGAATTGATGCTAAGCGG
GAATGAAGAAGAAGCAGGTAATTTAATGAGTGTCCATATTAAAAAGGCGCTGGAAGGTGTACTGATGCATATTAAATCTT
AA

Upstream 100 bases:

>100_bases
TATGGAACAACGCCTATCCGCCTAGCATATTTTTATGCTATATTAGTAAACAGAAAGAATTACAACTATTCAGTGAAGTC
TAGCAGAAGGAGCTGTTACT

Downstream 100 bases:

>100_bases
TCCAATTAAACCGGATTAAGGTTTTTATTTTGTTTTGATTTTTGGTTGACAGTTAACTGTCGGGTAGATATAATCAGAGT
TGTAATATTTTGAAAATATT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MGKIIKSESLHLQAYNLIKESIMEGNLKPDERVVEAKIASKLGTSRGTVREAIRMLTQDGLLIYNDGFVKVYEPTVEDVV
DIFECRESLEVLAVRLAIKNLTEEVKESLANNVQETKKVKPDSPELGQLDQQFHTIITEASNNGQLIKLLEVIKVKTHYM
RKSMVGGSFYPSFIEDHEQIFELMLSGNEEEAGNLMSVHIKKALEGVLMHIKS

Sequences:

>Translated_213_residues
MGKIIKSESLHLQAYNLIKESIMEGNLKPDERVVEAKIASKLGTSRGTVREAIRMLTQDGLLIYNDGFVKVYEPTVEDVV
DIFECRESLEVLAVRLAIKNLTEEVKESLANNVQETKKVKPDSPELGQLDQQFHTIITEASNNGQLIKLLEVIKVKTHYM
RKSMVGGSFYPSFIEDHEQIFELMLSGNEEEAGNLMSVHIKKALEGVLMHIKS
>Mature_212_residues
GKIIKSESLHLQAYNLIKESIMEGNLKPDERVVEAKIASKLGTSRGTVREAIRMLTQDGLLIYNDGFVKVYEPTVEDVVD
IFECRESLEVLAVRLAIKNLTEEVKESLANNVQETKKVKPDSPELGQLDQQFHTIITEASNNGQLIKLLEVIKVKTHYMR
KSMVGGSFYPSFIEDHEQIFELMLSGNEEEAGNLMSVHIKKALEGVLMHIKS

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082149, Length=201, Percent_Identity=23.3830845771144, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24001; Mature: 23870

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKIIKSESLHLQAYNLIKESIMEGNLKPDERVVEAKIASKLGTSRGTVREAIRMLTQDG
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
LLIYNDGFVKVYEPTVEDVVDIFECRESLEVLAVRLAIKNLTEEVKESLANNVQETKKVK
EEEEECCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDSPELGQLDQQFHTIITEASNNGQLIKLLEVIKVKTHYMRKSMVGGSFYPSFIEDHEQI
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
FELMLSGNEEEAGNLMSVHIKKALEGVLMHIKS
HHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GKIIKSESLHLQAYNLIKESIMEGNLKPDERVVEAKIASKLGTSRGTVREAIRMLTQDG
CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
LLIYNDGFVKVYEPTVEDVVDIFECRESLEVLAVRLAIKNLTEEVKESLANNVQETKKVK
EEEEECCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDSPELGQLDQQFHTIITEASNNGQLIKLLEVIKVKTHYMRKSMVGGSFYPSFIEDHEQI
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
FELMLSGNEEEAGNLMSVHIKKALEGVLMHIKS
HHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]