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The map label for this gene is ydeL [H]

Identifier: 23100143

GI number: 23100143

Start: 2757994

End: 2759388

Strand: Direct

Name: ydeL [H]

Synonym: OB2688

Alternate gene names: 23100143

Gene position: 2757994-2759388 (Clockwise)

Preceding gene: 23100139

Following gene: 23100144

Centisome position: 75.97

GC content: 35.2

Gene sequence:

>1395_bases
ATGGAAATGCTTAGTATACATTTGGATAGATCCATAGATACACCACTATATGAACAAATATATATGTATATAAAACAGGA
AATCATCAATTCTCATCTTGCATATGGAGAAAAGTTACCCTCCAAACGTAAATTATCGGAATTTCTCGAAGTCAGTCAAA
ATACAATTGAAACTGCATTTGATCAGCTTGTAGCAGAAGGATATATTGAATCGAGACCGCGAAAAGGATATTTTGTATTG
GCACAAGGCGATTTAGAATATATTTATCAAGCGAAAAACACTACATACGCAGAAAATACGTCTACAGATGAAATTAACTA
CGATTTTTATCCTAGTCGGATTGATACGGAAGCTTTTCCATTCGATCAATGGAAGAAGTATACAAAACAAATGATTGATA
AACAGCATCATCAGCTACTACTACTAGGAAACGCACAAGGGGATGTTGAGTTAAGAGAAGAAATTGCAAACTATCTTTAT
CACGCAAGAGGAATACGTTGTGACCGTGATTCCATTATCGTTGGTGCCGGTGTTGAAATTTTGTTACAACAACTTATTTC
TTTGTTCCCAAAAGAAACGTTATTTGGTATCGAAGACCCTGGTTACCAGCTGATTTTACATATTGTAAAACATTTTGGTC
ACCAAGCTTTCCCATTAGAAATGGATGATCAAGGGATTATTATGAAGAGATTAGAAGAAGCAGATCCAACATTAATTTAT
GTAACACCTTCTCATCATTTCCCATATGGATCTGTATTATCTATTAATAGAAGAAATCAATTACTTCAATGGGCAGAAGA
TGATCAGCAACGATATATTATTGAAGATGATTACGACAGTGAATTTCGATATACTGGAAAAACAATCCCGCCATTGAAAA
GCATGGATGCGAACGATCGCGTCATATATTTGGGATCCTTTTCGAAATCCTTAATACCTTCACTTAGAATAAGCTATATG
ATTTTGCCAAAGCAGTTATTGAACCTTTTTAACCATAAGCTTTCATTCTATCATTCCACTGTCTCCAGAATTGACCAACA
AGTACTTGCACAATTCATGAGAAATGGGGATTTTGAGAAACATCTTAATCGAATGCGAAAAATTTACCGAAGGAAGTTGG
AATTGGTTCTGGAACTTATCAAACCATACCATCCGACTATTCGTTTCATTGGGGAACAATCTGGATTGCATATTGTTTGT
GAAGTGAGAAATGGAAAAACGGAACAGGAGATCATAAATAATGCAAAAAAAGCAAAACTCAAAGTCTATCCGATTACTGC
CTATACTGCTACCGATTGGTTAACAGAACACCCGCAATTTATTATTGGATTTGCTGGGATTCCATATAGACATTTACAAG
ATGCGGTGGAATCATTTTTAGACATCTGCCTGTAA

Upstream 100 bases:

>100_bases
CTGATGATTTTTTATTATTATAAAAATAGATTGATATGTTTAAAAGTGCCAATTTCTTATAATTTGATAAGGTCAGTTTA
GTAGAGAGGAGTTATTCAGC

Downstream 100 bases:

>100_bases
ACATAGAAATATGATATAATTAGCATTTGTATTTATTTTTAAAGGTGTGACAGGATGAATAAACAGGAAATTATACAACG
TATACTCATTGTATTCACTA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 464

Protein sequence:

>464_residues
MEMLSIHLDRSIDTPLYEQIYMYIKQEIINSHLAYGEKLPSKRKLSEFLEVSQNTIETAFDQLVAEGYIESRPRKGYFVL
AQGDLEYIYQAKNTTYAENTSTDEINYDFYPSRIDTEAFPFDQWKKYTKQMIDKQHHQLLLLGNAQGDVELREEIANYLY
HARGIRCDRDSIIVGAGVEILLQQLISLFPKETLFGIEDPGYQLILHIVKHFGHQAFPLEMDDQGIIMKRLEEADPTLIY
VTPSHHFPYGSVLSINRRNQLLQWAEDDQQRYIIEDDYDSEFRYTGKTIPPLKSMDANDRVIYLGSFSKSLIPSLRISYM
ILPKQLLNLFNHKLSFYHSTVSRIDQQVLAQFMRNGDFEKHLNRMRKIYRRKLELVLELIKPYHPTIRFIGEQSGLHIVC
EVRNGKTEQEIINNAKKAKLKVYPITAYTATDWLTEHPQFIIGFAGIPYRHLQDAVESFLDICL

Sequences:

>Translated_464_residues
MEMLSIHLDRSIDTPLYEQIYMYIKQEIINSHLAYGEKLPSKRKLSEFLEVSQNTIETAFDQLVAEGYIESRPRKGYFVL
AQGDLEYIYQAKNTTYAENTSTDEINYDFYPSRIDTEAFPFDQWKKYTKQMIDKQHHQLLLLGNAQGDVELREEIANYLY
HARGIRCDRDSIIVGAGVEILLQQLISLFPKETLFGIEDPGYQLILHIVKHFGHQAFPLEMDDQGIIMKRLEEADPTLIY
VTPSHHFPYGSVLSINRRNQLLQWAEDDQQRYIIEDDYDSEFRYTGKTIPPLKSMDANDRVIYLGSFSKSLIPSLRISYM
ILPKQLLNLFNHKLSFYHSTVSRIDQQVLAQFMRNGDFEKHLNRMRKIYRRKLELVLELIKPYHPTIRFIGEQSGLHIVC
EVRNGKTEQEIINNAKKAKLKVYPITAYTATDWLTEHPQFIIGFAGIPYRHLQDAVESFLDICL
>Mature_464_residues
MEMLSIHLDRSIDTPLYEQIYMYIKQEIINSHLAYGEKLPSKRKLSEFLEVSQNTIETAFDQLVAEGYIESRPRKGYFVL
AQGDLEYIYQAKNTTYAENTSTDEINYDFYPSRIDTEAFPFDQWKKYTKQMIDKQHHQLLLLGNAQGDVELREEIANYLY
HARGIRCDRDSIIVGAGVEILLQQLISLFPKETLFGIEDPGYQLILHIVKHFGHQAFPLEMDDQGIIMKRLEEADPTLIY
VTPSHHFPYGSVLSINRRNQLLQWAEDDQQRYIIEDDYDSEFRYTGKTIPPLKSMDANDRVIYLGSFSKSLIPSLRISYM
ILPKQLLNLFNHKLSFYHSTVSRIDQQVLAQFMRNGDFEKHLNRMRKIYRRKLELVLELIKPYHPTIRFIGEQSGLHIVC
EVRNGKTEQEIINNAKKAKLKVYPITAYTATDWLTEHPQFIIGFAGIPYRHLQDAVESFLDICL

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790797, Length=396, Percent_Identity=25.5050505050505, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1787710, Length=370, Percent_Identity=25.9459459459459, Blast_Score=99, Evalue=7e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 54279; Mature: 54279

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMLSIHLDRSIDTPLYEQIYMYIKQEIINSHLAYGEKLPSKRKLSEFLEVSQNTIETAF
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
DQLVAEGYIESRPRKGYFVLAQGDLEYIYQAKNTTYAENTSTDEINYDFYPSRIDTEAFP
HHHHHHHHHHCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
FDQWKKYTKQMIDKQHHQLLLLGNAQGDVELREEIANYLYHARGIRCDRDSIIVGAGVEI
HHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHH
LLQQLISLFPKETLFGIEDPGYQLILHIVKHFGHQAFPLEMDDQGIIMKRLEEADPTLIY
HHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEEE
VTPSHHFPYGSVLSINRRNQLLQWAEDDQQRYIIEDDYDSEFRYTGKTIPPLKSMDANDR
EECCCCCCCCCEEEECHHHHHHHHCCCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCC
VIYLGSFSKSLIPSLRISYMILPKQLLNLFNHKLSFYHSTVSRIDQQVLAQFMRNGDFEK
EEEEECCCHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
HLNRMRKIYRRKLELVLELIKPYHPTIRFIGEQSGLHIVCEVRNGKTEQEIINNAKKAKL
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCHHHHHCCHHHCEE
KVYPITAYTATDWLTEHPQFIIGFAGIPYRHLQDAVESFLDICL
EEEEEEEEEHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEMLSIHLDRSIDTPLYEQIYMYIKQEIINSHLAYGEKLPSKRKLSEFLEVSQNTIETAF
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
DQLVAEGYIESRPRKGYFVLAQGDLEYIYQAKNTTYAENTSTDEINYDFYPSRIDTEAFP
HHHHHHHHHHCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
FDQWKKYTKQMIDKQHHQLLLLGNAQGDVELREEIANYLYHARGIRCDRDSIIVGAGVEI
HHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHH
LLQQLISLFPKETLFGIEDPGYQLILHIVKHFGHQAFPLEMDDQGIIMKRLEEADPTLIY
HHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEEE
VTPSHHFPYGSVLSINRRNQLLQWAEDDQQRYIIEDDYDSEFRYTGKTIPPLKSMDANDR
EECCCCCCCCCEEEECHHHHHHHHCCCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCC
VIYLGSFSKSLIPSLRISYMILPKQLLNLFNHKLSFYHSTVSRIDQQVLAQFMRNGDFEK
EEEEECCCHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
HLNRMRKIYRRKLELVLELIKPYHPTIRFIGEQSGLHIVCEVRNGKTEQEIINNAKKAKL
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCHHHHHCCHHHCEE
KVYPITAYTATDWLTEHPQFIIGFAGIPYRHLQDAVESFLDICL
EEEEEEEEEHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]