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The map label for this gene is ybgA [H]

Identifier: 23099727

GI number: 23099727

Start: 2315149

End: 2315877

Strand: Reverse

Name: ybgA [H]

Synonym: OB2272

Alternate gene names: 23099727

Gene position: 2315877-2315149 (Counterclockwise)

Preceding gene: 23099734

Following gene: 23099726

Centisome position: 63.79

GC content: 33.88

Gene sequence:

>729_bases
ATGGAGAAAAACCAATCTTTACATGCTTATATTAAGCAGGAGCTGTTACAACGAATTAAGACTAATCAATACAAAAAAGG
AGAAAAAATCCCACCTGAGTTAGAACTTTGCAAAGATTTTAATGTAAGCCGTACTACTGTTCGCACAGCGTTAAATCAAC
TTACACTAGAAGGTTACTTAGTTCGACAGCAAGGAAGTGGAACATATGTAGCTGATGAGAAAGTGAAGCAGACATTAACG
CAGACTGTTAAACGATATAGTGATCAGTTAGCTGTTCAGGGGAAAGTGTCAGATATTAATGTATTAGATATTTCTGTTAT
TGCTGCTGATGAAATGATAACTTCCAGTCTGAATGTAAATATAAAAGACCCAATACAGCGAATTGAACGAGTACGTAAAG
CAAATGGTCAGCCAACGCAGTATGAAATTGCGTTTATTCCTTGGTCCATTGCATCAGGAATTACTTACACAGATGCGGAA
ACTTCTTTATATAAATCGCTTAAGGAAAAGTTTAATGTTTTTATAGCTAAAACTTATGAAAATATGGAAATAACTTTTGC
AGATGATCAAATTTGTAAATATCTTGAATGTGAACCTGGGCTTCCATGTTTTTACATAGAAACAATTGCAGAAGATGAAG
AAGGAAGGAAAATAGAATTTTCAAAGTCATTTTTCCGTGGTGATAAGACTAACTTTACGATAGAACGAACTTATCCAGAA
TCAAATTAA

Upstream 100 bases:

>100_bases
TTGTCCATACAAATTTATAAAATTTGTTATAACACAATTTATTGTCAATTAGTTTTAAATCTTGTAAACTAAATAAAAAC
AGTGAAAAAGGAGTACGGTA

Downstream 100 bases:

>100_bases
ATGATGGAGGGATATCAATGAGGGTGGAGATTAATGCTGATGATTATGGCTTAACGAAAGGTGTTACCGACGGTATTATC
AAAGCACATAGAGGAGGATG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MEKNQSLHAYIKQELLQRIKTNQYKKGEKIPPELELCKDFNVSRTTVRTALNQLTLEGYLVRQQGSGTYVADEKVKQTLT
QTVKRYSDQLAVQGKVSDINVLDISVIAADEMITSSLNVNIKDPIQRIERVRKANGQPTQYEIAFIPWSIASGITYTDAE
TSLYKSLKEKFNVFIAKTYENMEITFADDQICKYLECEPGLPCFYIETIAEDEEGRKIEFSKSFFRGDKTNFTIERTYPE
SN

Sequences:

>Translated_242_residues
MEKNQSLHAYIKQELLQRIKTNQYKKGEKIPPELELCKDFNVSRTTVRTALNQLTLEGYLVRQQGSGTYVADEKVKQTLT
QTVKRYSDQLAVQGKVSDINVLDISVIAADEMITSSLNVNIKDPIQRIERVRKANGQPTQYEIAFIPWSIASGITYTDAE
TSLYKSLKEKFNVFIAKTYENMEITFADDQICKYLECEPGLPCFYIETIAEDEEGRKIEFSKSFFRGDKTNFTIERTYPE
SN
>Mature_242_residues
MEKNQSLHAYIKQELLQRIKTNQYKKGEKIPPELELCKDFNVSRTTVRTALNQLTLEGYLVRQQGSGTYVADEKVKQTLT
QTVKRYSDQLAVQGKVSDINVLDISVIAADEMITSSLNVNIKDPIQRIERVRKANGQPTQYEIAFIPWSIASGITYTDAE
TSLYKSLKEKFNVFIAKTYENMEITFADDQICKYLECEPGLPCFYIETIAEDEEGRKIEFSKSFFRGDKTNFTIERTYPE
SN

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082252, Length=238, Percent_Identity=31.0924369747899, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI1790118, Length=234, Percent_Identity=25.2136752136752, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1786950, Length=231, Percent_Identity=26.4069264069264, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788418, Length=218, Percent_Identity=24.3119266055046, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1790540, Length=238, Percent_Identity=24.7899159663866, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27818; Mature: 27818

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKNQSLHAYIKQELLQRIKTNQYKKGEKIPPELELCKDFNVSRTTVRTALNQLTLEGYL
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHEEEE
VRQQGSGTYVADEKVKQTLTQTVKRYSDQLAVQGKVSDINVLDISVIAADEMITSSLNVN
EEECCCCCEEEHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEEEEEEHHHHHHHHCCCC
IKDPIQRIERVRKANGQPTQYEIAFIPWSIASGITYTDAETSLYKSLKEKFNVFIAKTYE
CHHHHHHHHHHHHCCCCCCEEEEEEECHHHHCCCEECCCHHHHHHHHHHHHEEEEEEEEC
NMEITFADDQICKYLECEPGLPCFYIETIAEDEEGRKIEFSKSFFRGDKTNFTIERTYPE
CEEEEECCHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEECHHHHCCCCCCEEEEECCCC
SN
CC
>Mature Secondary Structure
MEKNQSLHAYIKQELLQRIKTNQYKKGEKIPPELELCKDFNVSRTTVRTALNQLTLEGYL
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHEEEE
VRQQGSGTYVADEKVKQTLTQTVKRYSDQLAVQGKVSDINVLDISVIAADEMITSSLNVN
EEECCCCCEEEHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEEEEEEHHHHHHHHCCCC
IKDPIQRIERVRKANGQPTQYEIAFIPWSIASGITYTDAETSLYKSLKEKFNVFIAKTYE
CHHHHHHHHHHHHCCCCCCEEEEEEECHHHHCCCEECCCHHHHHHHHHHHHEEEEEEEEC
NMEITFADDQICKYLECEPGLPCFYIETIAEDEEGRKIEFSKSFFRGDKTNFTIERTYPE
CEEEEECCHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEECHHHHCCCCCCEEEEECCCC
SN
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]