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The map label for this gene is ytdP [H]

Identifier: 23099548

GI number: 23099548

Start: 2125306

End: 2127615

Strand: Direct

Name: ytdP [H]

Synonym: OB2093

Alternate gene names: 23099548

Gene position: 2125306-2127615 (Clockwise)

Preceding gene: 23099547

Following gene: 23099551

Centisome position: 58.54

GC content: 29.83

Gene sequence:

>2310_bases
ATGTTTATGAAAAAAAATTCTATTAAACATTATTATAAATTAATTACATTTTTGATCGTATTGAGCACTGTTCCTGTAAT
ACTAGTTGGCGTTTTTTCTTATTTACGATCTTCCGAAATAATCGAAGCAAATGTAGCAGAAGAGAAACAACAAAGTGTTT
ATCAAATACAAACCAATGTTGAGCAAGTACTAAAAAGCGTTGATAACTCGCTTACACACTTTGTTCGCTCTCCAACTACT
CAAGACATATTAAGAGATCCTCTAAATGCTGACAATTTTATTAGATACAACAATTTCAAACAAGAATTGGGACATTTGCA
GACGTTAGAAACAGGTATTCAAGATGTTATTATGGTTAGTTTAGAGCATGAGTGGCTTATCAATAACAATGGTCTTCTTC
GTCTTAATGAACAAAGTTATAATAAAATTCATGAAAAATATATGACTTCTACTAACTCCTCTTACTGGATTCTGGAGGAA
TATGATGACATTGTTTTGACGAATGACGCGCGTGATAATTGTAACTACTATATAAATCTAATTAAGAAACTCCCATTTCT
TACATCAGATAAAACAGGTCTTGTAGGTGCACTTATACCAACATGTACCTTAAATAATATTATGGCAGAACAAATTGTAA
CAGAAACGTTTATTATTTTGGACGAGTCCAACCAAATCATCGCTGATAGTAATCCAAATAATGTCGGTAACTATCTTACG
GAAAATGAAGATTTAGGTAACCTTATTGATTTAGACTCAAGTAAAGGCCAATTCAATTCAACCATAGAAGATATCGATTA
TAAAATAACGTTTAGAAAATCTAGTTATAATAATTGGACATATGTATCAATGGTTAAAATAAGTGATCTCAACAAGCAAT
CCAGTTCCATCGGCTGGTTTACATTATTAGTTTGTACTATTTTATTAGTCATATCGCTAATTATAGCATTCATCGGAATT
AGTATATTTTATAAACCAATACGACATTTACAAGAATTCTTCACCAAGACTTTCACATCATCCACTAAATTTAGTACAAA
AACTAAAAATGAATTCGATTTAATTAAATTTAATATCGAACAAATGCTTGATAAAAATGTTGAGTTAGAATCTCGGCTAC
AAAATCAGATTACCCAGCTAAGACAATTCTTTATTATACGATTATTGCAAGGTAAAATGGAACGCGAGGAAATTCCAGCG
AAATTAAAATCATTTAAATACAATCAGACATGGTCAAGACTCTCCTTATTTACATTACAAATCGATTCATTGGATGATTC
TAACTACCAATCAAAAGAAGAAGATGTCATTTTATTTGCAATAAATGCTATGATTGAAGATACCTTAGAAGAAGAATTAC
GATTTACCCCTGTAGTTATAAACCGAACACAGGTAACAATACTTACACTGGATATTGAGTCTGAAGAAGAATACCACTTC
TATTTAAATGAGTTAGCACAGATGATTCAATCTAAAATACGCAAGGAATTTGATCTTCCTGTAAGTATCGGTATTAGTCT
GCCATACACCGAATTAGTTTCGACAAAAGATGCATATAAACAAGGGATGGAATCACTGAAATATAGATTAAAGCTAGGAA
AAGAATCCATTATCTTCTATGAAAATTTAGATCGAAATTATCATTTTAATGGACAACTACCCTCAACCAATAAAAATTTA
ATTTTTGATTCCATTAAAGTTGCTGACCGTGAAAAAGTAGATAAAGGATTGCAAGAATTGTTTAATACTTTATTTGATAA
GGAATTTAATCATAATCAATATCAGATATTTATAATTAAGTTTCTTTATGATTTAATCGAATTAAAGCAATTATTAGGAG
TAGATTTAAAAAATCTCGATGAAAGACCTCTTGTTCATGAATTGGAAAACCTAAGAACCTCAGATGACTTACAAAAATGG
TTTAAAGATAACCTCATTTATCCAATTATCGAAAAAGTGGAGGAACGCACTGAATCCAAATACAAAACTATTTCAGATAA
AATTATTCATATCATACAAAAAGAGTATGACACAGCTATATCATTGGATTCTATTGCAGCTAGACTACATTATAATCCCA
ATTATCTTAGTAGTATCTTTCAAAAAGAGATGAAAACCACTTTCAGTGAATATTTATTGAAATATCGAATAAACATAGCA
AAAAAATGGTTAGTAGATACGGATTTGTCTGTTAAAGATATTGCGATTAAACTGCAATACAATAATTCCCAAAACTTCAT
TCGTTCCTTTAGAAAAATCGAAGGTATTACTCCAGGAAAGTTTAGATCAGAAAATAAAAAAACAGGATAA

Upstream 100 bases:

>100_bases
CATATTTATCTTTTAAGAACCTTGATAAAAAAAGAAACAACCAGCAAGCTCAAAACACTTTGTCTTAAAGGCTTCAAAAA
GTATGCAGTCATTGGGGTAG

Downstream 100 bases:

>100_bases
AAGTGATCTTTAAAAGACACTTTCACCCTGTTTTTTATTTATTTTTTATTATGTCATTTGAATTCATTTTAGAAACAAAC
CCTAATTTTTCTTTTGCATT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 769; Mature: 769

Protein sequence:

>769_residues
MFMKKNSIKHYYKLITFLIVLSTVPVILVGVFSYLRSSEIIEANVAEEKQQSVYQIQTNVEQVLKSVDNSLTHFVRSPTT
QDILRDPLNADNFIRYNNFKQELGHLQTLETGIQDVIMVSLEHEWLINNNGLLRLNEQSYNKIHEKYMTSTNSSYWILEE
YDDIVLTNDARDNCNYYINLIKKLPFLTSDKTGLVGALIPTCTLNNIMAEQIVTETFIILDESNQIIADSNPNNVGNYLT
ENEDLGNLIDLDSSKGQFNSTIEDIDYKITFRKSSYNNWTYVSMVKISDLNKQSSSIGWFTLLVCTILLVISLIIAFIGI
SIFYKPIRHLQEFFTKTFTSSTKFSTKTKNEFDLIKFNIEQMLDKNVELESRLQNQITQLRQFFIIRLLQGKMEREEIPA
KLKSFKYNQTWSRLSLFTLQIDSLDDSNYQSKEEDVILFAINAMIEDTLEEELRFTPVVINRTQVTILTLDIESEEEYHF
YLNELAQMIQSKIRKEFDLPVSIGISLPYTELVSTKDAYKQGMESLKYRLKLGKESIIFYENLDRNYHFNGQLPSTNKNL
IFDSIKVADREKVDKGLQELFNTLFDKEFNHNQYQIFIIKFLYDLIELKQLLGVDLKNLDERPLVHELENLRTSDDLQKW
FKDNLIYPIIEKVEERTESKYKTISDKIIHIIQKEYDTAISLDSIAARLHYNPNYLSSIFQKEMKTTFSEYLLKYRINIA
KKWLVDTDLSVKDIAIKLQYNNSQNFIRSFRKIEGITPGKFRSENKKTG

Sequences:

>Translated_769_residues
MFMKKNSIKHYYKLITFLIVLSTVPVILVGVFSYLRSSEIIEANVAEEKQQSVYQIQTNVEQVLKSVDNSLTHFVRSPTT
QDILRDPLNADNFIRYNNFKQELGHLQTLETGIQDVIMVSLEHEWLINNNGLLRLNEQSYNKIHEKYMTSTNSSYWILEE
YDDIVLTNDARDNCNYYINLIKKLPFLTSDKTGLVGALIPTCTLNNIMAEQIVTETFIILDESNQIIADSNPNNVGNYLT
ENEDLGNLIDLDSSKGQFNSTIEDIDYKITFRKSSYNNWTYVSMVKISDLNKQSSSIGWFTLLVCTILLVISLIIAFIGI
SIFYKPIRHLQEFFTKTFTSSTKFSTKTKNEFDLIKFNIEQMLDKNVELESRLQNQITQLRQFFIIRLLQGKMEREEIPA
KLKSFKYNQTWSRLSLFTLQIDSLDDSNYQSKEEDVILFAINAMIEDTLEEELRFTPVVINRTQVTILTLDIESEEEYHF
YLNELAQMIQSKIRKEFDLPVSIGISLPYTELVSTKDAYKQGMESLKYRLKLGKESIIFYENLDRNYHFNGQLPSTNKNL
IFDSIKVADREKVDKGLQELFNTLFDKEFNHNQYQIFIIKFLYDLIELKQLLGVDLKNLDERPLVHELENLRTSDDLQKW
FKDNLIYPIIEKVEERTESKYKTISDKIIHIIQKEYDTAISLDSIAARLHYNPNYLSSIFQKEMKTTFSEYLLKYRINIA
KKWLVDTDLSVKDIAIKLQYNNSQNFIRSFRKIEGITPGKFRSENKKTG
>Mature_769_residues
MFMKKNSIKHYYKLITFLIVLSTVPVILVGVFSYLRSSEIIEANVAEEKQQSVYQIQTNVEQVLKSVDNSLTHFVRSPTT
QDILRDPLNADNFIRYNNFKQELGHLQTLETGIQDVIMVSLEHEWLINNNGLLRLNEQSYNKIHEKYMTSTNSSYWILEE
YDDIVLTNDARDNCNYYINLIKKLPFLTSDKTGLVGALIPTCTLNNIMAEQIVTETFIILDESNQIIADSNPNNVGNYLT
ENEDLGNLIDLDSSKGQFNSTIEDIDYKITFRKSSYNNWTYVSMVKISDLNKQSSSIGWFTLLVCTILLVISLIIAFIGI
SIFYKPIRHLQEFFTKTFTSSTKFSTKTKNEFDLIKFNIEQMLDKNVELESRLQNQITQLRQFFIIRLLQGKMEREEIPA
KLKSFKYNQTWSRLSLFTLQIDSLDDSNYQSKEEDVILFAINAMIEDTLEEELRFTPVVINRTQVTILTLDIESEEEYHF
YLNELAQMIQSKIRKEFDLPVSIGISLPYTELVSTKDAYKQGMESLKYRLKLGKESIIFYENLDRNYHFNGQLPSTNKNL
IFDSIKVADREKVDKGLQELFNTLFDKEFNHNQYQIFIIKFLYDLIELKQLLGVDLKNLDERPLVHELENLRTSDDLQKW
FKDNLIYPIIEKVEERTESKYKTISDKIIHIIQKEYDTAISLDSIAARLHYNPNYLSSIFQKEMKTTFSEYLLKYRINIA
KKWLVDTDLSVKDIAIKLQYNNSQNFIRSFRKIEGITPGKFRSENKKTG

Specific function: Transcription Activator For The Expression Of The Melab Operon. Melr Binds At Two Sites Located Upstream Of The Melab Transcription Site. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790559, Length=96, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI1790391, Length=109, Percent_Identity=33.9449541284404, Blast_Score=67, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 90021; Mature: 90021

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFMKKNSIKHYYKLITFLIVLSTVPVILVGVFSYLRSSEIIEANVAEEKQQSVYQIQTNV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
EQVLKSVDNSLTHFVRSPTTQDILRDPLNADNFIRYNNFKQELGHLQTLETGIQDVIMVS
HHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHEEEE
LEHEWLINNNGLLRLNEQSYNKIHEKYMTSTNSSYWILEEYDDIVLTNDARDNCNYYINL
ECCCEEECCCCEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCHHHHHHH
IKKLPFLTSDKTGLVGALIPTCTLNNIMAEQIVTETFIILDESNQIIADSNPNNVGNYLT
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEECCCCCCCCCCCC
ENEDLGNLIDLDSSKGQFNSTIEDIDYKITFRKSSYNNWTYVSMVKISDLNKQSSSIGWF
CCCCCCCEEECCCCCCCCCCCHHCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCCCHHH
TLLVCTILLVISLIIAFIGISIFYKPIRHLQEFFTKTFTSSTKFSTKTKNEFDLIKFNIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHEEEHH
QMLDKNVELESRLQNQITQLRQFFIIRLLQGKMEREEIPAKLKSFKYNQTWSRLSLFTLQ
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEE
IDSLDDSNYQSKEEDVILFAINAMIEDTLEEELRFTPVVINRTQVTILTLDIESEEEYHF
EECCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEECEEEEEEEEEECCCCHHHH
YLNELAQMIQSKIRKEFDLPVSIGISLPYTELVSTKDAYKQGMESLKYRLKLGKESIIFY
HHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEE
ENLDRNYHFNGQLPSTNKNLIFDSIKVADREKVDKGLQELFNTLFDKEFNHNQYQIFIIK
ECCCCCEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHH
FLYDLIELKQLLGVDLKNLDERPLVHELENLRTSDDLQKWFKDNLIYPIIEKVEERTESK
HHHHHHHHHHHHCCCHHCCCCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
YKTISDKIIHIIQKEYDTAISLDSIAARLHYNPNYLSSIFQKEMKTTFSEYLLKYRINIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKWLVDTDLSVKDIAIKLQYNNSQNFIRSFRKIEGITPGKFRSENKKTG
HHHHCCCCCCEEEEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFMKKNSIKHYYKLITFLIVLSTVPVILVGVFSYLRSSEIIEANVAEEKQQSVYQIQTNV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
EQVLKSVDNSLTHFVRSPTTQDILRDPLNADNFIRYNNFKQELGHLQTLETGIQDVIMVS
HHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHEEEE
LEHEWLINNNGLLRLNEQSYNKIHEKYMTSTNSSYWILEEYDDIVLTNDARDNCNYYINL
ECCCEEECCCCEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCHHHHHHH
IKKLPFLTSDKTGLVGALIPTCTLNNIMAEQIVTETFIILDESNQIIADSNPNNVGNYLT
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEECCCCCCCCCCCC
ENEDLGNLIDLDSSKGQFNSTIEDIDYKITFRKSSYNNWTYVSMVKISDLNKQSSSIGWF
CCCCCCCEEECCCCCCCCCCCHHCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCCCHHH
TLLVCTILLVISLIIAFIGISIFYKPIRHLQEFFTKTFTSSTKFSTKTKNEFDLIKFNIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHEEEHH
QMLDKNVELESRLQNQITQLRQFFIIRLLQGKMEREEIPAKLKSFKYNQTWSRLSLFTLQ
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEE
IDSLDDSNYQSKEEDVILFAINAMIEDTLEEELRFTPVVINRTQVTILTLDIESEEEYHF
EECCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEECEEEEEEEEEECCCCHHHH
YLNELAQMIQSKIRKEFDLPVSIGISLPYTELVSTKDAYKQGMESLKYRLKLGKESIIFY
HHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEE
ENLDRNYHFNGQLPSTNKNLIFDSIKVADREKVDKGLQELFNTLFDKEFNHNQYQIFIIK
ECCCCCEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHH
FLYDLIELKQLLGVDLKNLDERPLVHELENLRTSDDLQKWFKDNLIYPIIEKVEERTESK
HHHHHHHHHHHHCCCHHCCCCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
YKTISDKIIHIIQKEYDTAISLDSIAARLHYNPNYLSSIFQKEMKTTFSEYLLKYRINIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKWLVDTDLSVKDIAIKLQYNNSQNFIRSFRKIEGITPGKFRSENKKTG
HHHHCCCCCCEEEEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]