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The map label for this gene is ybeY [C]

Identifier: 23099408

GI number: 23099408

Start: 1980815

End: 1981279

Strand: Reverse

Name: ybeY [C]

Synonym: OB1953

Alternate gene names: 23099408

Gene position: 1981279-1980815 (Counterclockwise)

Preceding gene: 23099409

Following gene: 23099407

Centisome position: 54.57

GC content: 34.19

Gene sequence:

>465_bases
ATGCATATTGACTTTCACGATGAAACAAACTCTGTATCGGAGGATTATATTGATTTAATTCAACGATTATTGGATTTTGC
TGCTCAAAAAGAAGGAGTTACTTCTGAAGCTGAATTGTCCGTAAACTTTGTCGACAATAAAGAAATTCAAGTTCTCAACC
GTAATTACCGTCAAAAAGATACTCCAACAGATGTTATTTCATTTGCAATGCAAGAAAGTAATGAAGATGAGATGGAGATC
ATCGGAGCTGATGGACCACTAGTATTAGGAGATATTGTTATCTCTGTGGATAAAGCAAAAGAACAATCCATTGAATATGA
TCATAGTCTAGAAAGAGAATTAGGATTTTTAGCAGTACATGGTTTTTTACACCTGTTAGGTTATGATCATATGAAAGAAG
AGGATGAGAAGAAAATGTTTTCTCGACAAGAAGAAATACTAGGTGAGTTTGGCGTTGAAAGGTAA

Upstream 100 bases:

>100_bases
TAACATTAAAGGAGCTTACTGTAATTCAATTTACTATTTGTGAATCACTCAAAGGAATATTTCACTCTCGAATCCAATAT
CCGAAAGAGGAGGAAAACTA

Downstream 100 bases:

>100_bases
ACGAAGAAAAATAGGCTTCCGATATGCTTGGGATGGTCTTAAAGAAATTGCTTCGACGGAATCCAATTTTCAACTACATT
TAATTTCAACGGTAATTGTA

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MHIDFHDETNSVSEDYIDLIQRLLDFAAQKEGVTSEAELSVNFVDNKEIQVLNRNYRQKDTPTDVISFAMQESNEDEMEI
IGADGPLVLGDIVISVDKAKEQSIEYDHSLERELGFLAVHGFLHLLGYDHMKEEDEKKMFSRQEEILGEFGVER

Sequences:

>Translated_154_residues
MHIDFHDETNSVSEDYIDLIQRLLDFAAQKEGVTSEAELSVNFVDNKEIQVLNRNYRQKDTPTDVISFAMQESNEDEMEI
IGADGPLVLGDIVISVDKAKEQSIEYDHSLERELGFLAVHGFLHLLGYDHMKEEDEKKMFSRQEEILGEFGVER
>Mature_154_residues
MHIDFHDETNSVSEDYIDLIQRLLDFAAQKEGVTSEAELSVNFVDNKEIQVLNRNYRQKDTPTDVISFAMQESNEDEMEI
IGADGPLVLGDIVISVDKAKEQSIEYDHSLERELGFLAVHGFLHLLGYDHMKEEDEKKMFSRQEEILGEFGVER

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Homo sapiens, GI54607072, Length=137, Percent_Identity=35.036496350365, Blast_Score=68, Evalue=3e-12,
Organism=Escherichia coli, GI1786880, Length=118, Percent_Identity=35.5932203389831, Blast_Score=70, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_OCEIH (Q8EPX8)

Other databases:

- EMBL:   BA000028
- RefSeq:   NP_692874.1
- ProteinModelPortal:   Q8EPX8
- SMR:   Q8EPX8
- GeneID:   1018430
- GenomeReviews:   BA000028_GR
- KEGG:   oih:OB1953
- NMPDR:   fig|221109.1.peg.1953
- HOGENOM:   HBG734136
- OMA:   LNGYDHM
- ProtClustDB:   PRK00016
- BioCyc:   OIHE221109:OB1953-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17709; Mature: 17709

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIDFHDETNSVSEDYIDLIQRLLDFAAQKEGVTSEAELSVNFVDNKEIQVLNRNYRQKD
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHCCCCCCCC
TPTDVISFAMQESNEDEMEIIGADGPLVLGDIVISVDKAKEQSIEYDHSLERELGFLAVH
CHHHHHHHHHHCCCCCCEEEECCCCCEEEEHHEEEHHHHHHHHCCHHHHHHHHHHHHHHH
GFLHLLGYDHMKEEDEKKMFSRQEEILGEFGVER
HHHHHHCCHHCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MHIDFHDETNSVSEDYIDLIQRLLDFAAQKEGVTSEAELSVNFVDNKEIQVLNRNYRQKD
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHCCCCCCCC
TPTDVISFAMQESNEDEMEIIGADGPLVLGDIVISVDKAKEQSIEYDHSLERELGFLAVH
CHHHHHHHHHHCCCCCCEEEECCCCCEEEEHHEEEHHHHHHHHCCHHHHHHHHHHHHHHH
GFLHLLGYDHMKEEDEKKMFSRQEEILGEFGVER
HHHHHHCCHHCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376