Click here to switch to the map view.

The map label for this gene is scpA

Identifier: 23099283

GI number: 23099283

Start: 1863608

End: 1864357

Strand: Reverse

Name: scpA

Synonym: OB1828

Alternate gene names: 23099283

Gene position: 1864357-1863608 (Counterclockwise)

Preceding gene: 23099285

Following gene: 23099282

Centisome position: 51.35

GC content: 33.87

Gene sequence:

>750_bases
ATGCACGAAGGATATAAAGTAAAACTGGATACATTTGAGGGTCCATTAGATTTATTATTACATTTAATTAATCAATTTGA
AATCGACATATATGATATTCCTGTAGCTCAAATTACACAACAATATATGGAGTATATACATACTATGCAGCATTTGGAAT
TAAATATAGCTAGTGAATACTTAGTAATGGCCTCCACATTATTAGCGATAAAAAGCCAAATGCTTTTGCCAAAGCAAGAG
TTAGAAGATGATCTTGATGAAGAGTATATGGAAGACCCAAGGGAAGAATTGATGCAACGACTGATTGAGTACCGAAAATA
TAAAGAAATAGCAGAGCGCTTAAAAGAAAAGGAAAGTGAAGACAACCAATTATACACTCGTCCACCAGTTGTTTTTGAAT
TCAAAGACATACCGGAAAAGATTACAACCAACCAAACCGATATTTCAATATTCGATATGGTTGGTGCATTGAAAAATATG
TTAAAAAGAAAAGAATGGACTGAACCACATGATACAACAGTGCAACGAATGGATATTCCAATTGAGACACGCATGAAAGA
AGTTCTGCAGCAGGTGCAGTCCAACTCAGATGGATTGGTGTTTGATAAATTATTTCCTTCACCGACTAAAAATTATATTG
TCGTTACATTTGTAGCAGTTCTTGAATTAATGAAGGATAAGCAAATTTATGCTGTACAGGAACGACATTTTGAAGAACTG
TATTTATATAGCATGGAGGAATCTACGTGA

Upstream 100 bases:

>100_bases
TGTGATAACATTTATACTACGCTATAGCTTATGTAAGATATGTATACTGTGTATGGGCGCAACTCACATATCTAATTATT
TTTTGAAAGGAAACCATACT

Downstream 100 bases:

>100_bases
ATATGAATGAATTTAAAGGCGTTATAGAAGGATTACTATTTGCTAGTGGCGATGAAGGTGTTACGGCAAAGCAATTAAGC
AAAATATTAGATATAGGGCT

Product: segregation and condensation protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MHEGYKVKLDTFEGPLDLLLHLINQFEIDIYDIPVAQITQQYMEYIHTMQHLELNIASEYLVMASTLLAIKSQMLLPKQE
LEDDLDEEYMEDPREELMQRLIEYRKYKEIAERLKEKESEDNQLYTRPPVVFEFKDIPEKITTNQTDISIFDMVGALKNM
LKRKEWTEPHDTTVQRMDIPIETRMKEVLQQVQSNSDGLVFDKLFPSPTKNYIVVTFVAVLELMKDKQIYAVQERHFEEL
YLYSMEEST

Sequences:

>Translated_249_residues
MHEGYKVKLDTFEGPLDLLLHLINQFEIDIYDIPVAQITQQYMEYIHTMQHLELNIASEYLVMASTLLAIKSQMLLPKQE
LEDDLDEEYMEDPREELMQRLIEYRKYKEIAERLKEKESEDNQLYTRPPVVFEFKDIPEKITTNQTDISIFDMVGALKNM
LKRKEWTEPHDTTVQRMDIPIETRMKEVLQQVQSNSDGLVFDKLFPSPTKNYIVVTFVAVLELMKDKQIYAVQERHFEEL
YLYSMEEST
>Mature_249_residues
MHEGYKVKLDTFEGPLDLLLHLINQFEIDIYDIPVAQITQQYMEYIHTMQHLELNIASEYLVMASTLLAIKSQMLLPKQE
LEDDLDEEYMEDPREELMQRLIEYRKYKEIAERLKEKESEDNQLYTRPPVVFEFKDIPEKITTNQTDISIFDMVGALKNM
LKRKEWTEPHDTTVQRMDIPIETRMKEVLQQVQSNSDGLVFDKLFPSPTKNYIVVTFVAVLELMKDKQIYAVQERHFEEL
YLYSMEEST

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpB that pull DNA away from mid-cell into both cell halves

COG id: COG1354

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SCPA_OCEIH (Q7ZAM4)

Other databases:

- EMBL:   BA000028
- RefSeq:   NP_692749.1
- GeneID:   1018322
- GenomeReviews:   BA000028_GR
- KEGG:   oih:OB1828
- NMPDR:   fig|221109.1.peg.1829
- HOGENOM:   HBG728383
- OMA:   TEQYLAY
- ProtClustDB:   PRK00104
- BioCyc:   OIHE221109:OB1828-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01805
- InterPro:   IPR003768

Pfam domain/function: PF02616 ScpA_ScpB

EC number: NA

Molecular weight: Translated: 29644; Mature: 29644

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEGYKVKLDTFEGPLDLLLHLINQFEIDIYDIPVAQITQQYMEYIHTMQHLELNIASEY
CCCCEEEEEECCCCHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
LVMASTLLAIKSQMLLPKQELEDDLDEEYMEDPREELMQRLIEYRKYKEIAERLKEKESE
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DNQLYTRPPVVFEFKDIPEKITTNQTDISIFDMVGALKNMLKRKEWTEPHDTTVQRMDIP
CCCEEECCCEEEEHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCC
IETRMKEVLQQVQSNSDGLVFDKLFPSPTKNYIVVTFVAVLELMKDKQIYAVQERHFEEL
HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
YLYSMEEST
HHHHCCCCC
>Mature Secondary Structure
MHEGYKVKLDTFEGPLDLLLHLINQFEIDIYDIPVAQITQQYMEYIHTMQHLELNIASEY
CCCCEEEEEECCCCHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
LVMASTLLAIKSQMLLPKQELEDDLDEEYMEDPREELMQRLIEYRKYKEIAERLKEKESE
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DNQLYTRPPVVFEFKDIPEKITTNQTDISIFDMVGALKNMLKRKEWTEPHDTTVQRMDIP
CCCEEECCCEEEEHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCC
IETRMKEVLQQVQSNSDGLVFDKLFPSPTKNYIVVTFVAVLELMKDKQIYAVQERHFEEL
HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
YLYSMEEST
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376