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The map label for this gene is ypsC [H]

Identifier: 23099204

GI number: 23099204

Start: 1788004

End: 1789131

Strand: Reverse

Name: ypsC [H]

Synonym: OB1749

Alternate gene names: 23099204

Gene position: 1789131-1788004 (Counterclockwise)

Preceding gene: 23099205

Following gene: 23099203

Centisome position: 49.28

GC content: 35.46

Gene sequence:

>1128_bases
ATGAAACAAGTTAGATTATTAGCAACAACTGCAATGGGGTTAGAATCTATTGTTGCAGATGAAGTAAGAAATTTAGGATA
TGATGTGCAAGTTGAGAATGGAAAAGTACTCTTTGACGCTCCTATTCAAGCAATTCCTCGTTGTAATTTATGGCTCCGTT
CAGCTGATCGAGTGAAAATAATTGTAGGTGAATTTGAAGCATATTCTTTTGATGAGCTATTTGAAAATACAAAAGCATTA
CCTTGGGAAAATTATATAGCAGAAGATGGACAGGTTCCTGTTTCCGGAAAATCAGTTAAATCAAAGCTATATAGTGTTTC
TGATTGTCAAGCAATAGTAAAAAAAGCAATTGTAGAGCGACTAAAGCGAAAATATGGTCTCATTAATAAATTAACGGAGA
CTGGGGCCTTATTTAAGACGGAAGTATCCATACTAAAAGACAAAGTAACACTAACAATAGATACTTCAGGAACTGGTTTA
CATAAAAGAGGTTATCGAGTAGGACAAGGAGAAGCTCCATTAAAGGAAACATTAGCTGCTGCACTTGTTCAACTAACAAA
TTGGAAGCCAGACTTTCCTTTGATCGATCCGTTTTGTGGATCGGGTACGTTATTAATAGAAGCTGCTTTAATTGGACAGA
ACATCGCTCCAGGCTTTAATCGTGAGTTTGCTGCTGAAGATTGGGATTGGATTCGTCAAAAACATTGGGATCAAGCCTTT
CAAGAAGCAGAGGATTTTGCTAAATACGACCAACCTTTAAATATTGTTGGAAGTGATATTGACCATCGGATGATTGAAAC
AGCTAAAGCTAATGCATTAGAAGCTGGACTAGGCGATTTAATTACTTGGAAGCAGATGCAAGTAAAGGATATGACCATTA
AAAAACCAAATGGATACATTATTACAAACCCTCCGTATGGACAGCGACTTAGTGATAAAGAGGAAGTAGAGCAAATGTAT
CGTGATCTTGGTAAGGTAATGAACCAACATCCTTCTTGGAGTGTTTACACAATTACCGCTTTTGATAAATTTGAACAAGC
ATATGGAAAAAAAGCAACAAAGAAAAGAAAACTATTTAATGGATTTATTCAAACCAACTATTATCAATATTTTGGACAAA
AAGAATAA

Upstream 100 bases:

>100_bases
TTTATACAAGGGTTTTTTATGTGAAATAGGTTATCTTGGTTCCTCATTTAAAAATATGTTACACTTATACTACTTTTTTA
ACGGAAAGGACTTATCCCGT

Downstream 100 bases:

>100_bases
ATATACGAAAACCTCCTGGTAGTGTTCCTTCTCAGTAGTATTAACAATTGAGGGATTACTACTTAAGGAGGTTTTTTCTT
TTGACTGTTTGTATGAATCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MKQVRLLATTAMGLESIVADEVRNLGYDVQVENGKVLFDAPIQAIPRCNLWLRSADRVKIIVGEFEAYSFDELFENTKAL
PWENYIAEDGQVPVSGKSVKSKLYSVSDCQAIVKKAIVERLKRKYGLINKLTETGALFKTEVSILKDKVTLTIDTSGTGL
HKRGYRVGQGEAPLKETLAAALVQLTNWKPDFPLIDPFCGSGTLLIEAALIGQNIAPGFNREFAAEDWDWIRQKHWDQAF
QEAEDFAKYDQPLNIVGSDIDHRMIETAKANALEAGLGDLITWKQMQVKDMTIKKPNGYIITNPPYGQRLSDKEEVEQMY
RDLGKVMNQHPSWSVYTITAFDKFEQAYGKKATKKRKLFNGFIQTNYYQYFGQKE

Sequences:

>Translated_375_residues
MKQVRLLATTAMGLESIVADEVRNLGYDVQVENGKVLFDAPIQAIPRCNLWLRSADRVKIIVGEFEAYSFDELFENTKAL
PWENYIAEDGQVPVSGKSVKSKLYSVSDCQAIVKKAIVERLKRKYGLINKLTETGALFKTEVSILKDKVTLTIDTSGTGL
HKRGYRVGQGEAPLKETLAAALVQLTNWKPDFPLIDPFCGSGTLLIEAALIGQNIAPGFNREFAAEDWDWIRQKHWDQAF
QEAEDFAKYDQPLNIVGSDIDHRMIETAKANALEAGLGDLITWKQMQVKDMTIKKPNGYIITNPPYGQRLSDKEEVEQMY
RDLGKVMNQHPSWSVYTITAFDKFEQAYGKKATKKRKLFNGFIQTNYYQYFGQKE
>Mature_375_residues
MKQVRLLATTAMGLESIVADEVRNLGYDVQVENGKVLFDAPIQAIPRCNLWLRSADRVKIIVGEFEAYSFDELFENTKAL
PWENYIAEDGQVPVSGKSVKSKLYSVSDCQAIVKKAIVERLKRKYGLINKLTETGALFKTEVSILKDKVTLTIDTSGTGL
HKRGYRVGQGEAPLKETLAAALVQLTNWKPDFPLIDPFCGSGTLLIEAALIGQNIAPGFNREFAAEDWDWIRQKHWDQAF
QEAEDFAKYDQPLNIVGSDIDHRMIETAKANALEAGLGDLITWKQMQVKDMTIKKPNGYIITNPPYGQRLSDKEEVEQMY
RDLGKVMNQHPSWSVYTITAFDKFEQAYGKKATKKRKLFNGFIQTNYYQYFGQKE

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=375, Percent_Identity=33.6, Blast_Score=184, Evalue=6e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 42514; Mature: 42514

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQVRLLATTAMGLESIVADEVRNLGYDVQVENGKVLFDAPIQAIPRCNLWLRSADRVKI
CCCEEEHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEECCHHHCCCCCEEEECCCCEEE
IVGEFEAYSFDELFENTKALPWENYIAEDGQVPVSGKSVKSKLYSVSDCQAIVKKAIVER
EEECCCCCCHHHHHHCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LKRKYGLINKLTETGALFKTEVSILKDKVTLTIDTSGTGLHKRGYRVGQGEAPLKETLAA
HHHHHHHHHHHHHHCCHHHHHHHHHHCEEEEEEECCCCCCHHCCCCCCCCCCCHHHHHHH
ALVQLTNWKPDFPLIDPFCGSGTLLIEAALIGQNIAPGFNREFAAEDWDWIRQKHWDQAF
HHHHHHCCCCCCCCCCCCCCCCCEEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
QEAEDFAKYDQPLNIVGSDIDHRMIETAKANALEAGLGDLITWKQMQVKDMTIKKPNGYI
HHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHEEEECCEEECCCCEE
ITNPPYGQRLSDKEEVEQMYRDLGKVMNQHPSWSVYTITAFDKFEQAYGKKATKKRKLFN
ECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCHHHHHHHHHHH
GFIQTNYYQYFGQKE
HHHHHHHHHHCCCCC
>Mature Secondary Structure
MKQVRLLATTAMGLESIVADEVRNLGYDVQVENGKVLFDAPIQAIPRCNLWLRSADRVKI
CCCEEEHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEECCHHHCCCCCEEEECCCCEEE
IVGEFEAYSFDELFENTKALPWENYIAEDGQVPVSGKSVKSKLYSVSDCQAIVKKAIVER
EEECCCCCCHHHHHHCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LKRKYGLINKLTETGALFKTEVSILKDKVTLTIDTSGTGLHKRGYRVGQGEAPLKETLAA
HHHHHHHHHHHHHHCCHHHHHHHHHHCEEEEEEECCCCCCHHCCCCCCCCCCCHHHHHHH
ALVQLTNWKPDFPLIDPFCGSGTLLIEAALIGQNIAPGFNREFAAEDWDWIRQKHWDQAF
HHHHHHCCCCCCCCCCCCCCCCCEEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
QEAEDFAKYDQPLNIVGSDIDHRMIETAKANALEAGLGDLITWKQMQVKDMTIKKPNGYI
HHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHEEEECCEEECCCCEE
ITNPPYGQRLSDKEEVEQMYRDLGKVMNQHPSWSVYTITAFDKFEQAYGKKATKKRKLFN
ECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCHHHHHHHHHHH
GFIQTNYYQYFGQKE
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]