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The map label for this gene is 23098988

Identifier: 23098988

GI number: 23098988

Start: 1577967

End: 1578194

Strand: Direct

Name: 23098988

Synonym: OB1533

Alternate gene names: NA

Gene position: 1577967-1578194 (Clockwise)

Preceding gene: 23098987

Following gene: 23098989

Centisome position: 43.46

GC content: 35.53

Gene sequence:

>228_bases
ATGAAAGCCCTAATAGAATCGATTGTTGCCTCGTTAGTGGATTATCCGGAAGAGATTGTTATTAATAAGACAGAGGAAGA
ATCCAAAGTCGTATATCATTTAACAGTGCATCCGGATGATGTAGGAAAAGTAATTGGCAAGAACGGTCGAATTGCTAAAG
CGATTCGAACAGTTGTTTATGCTTCAAAAACGGATGGTAATAAACGTATTTATTTGGATATTATGTAA

Upstream 100 bases:

>100_bases
GGCGCTAAACCAAGTGATACTGTTCGTAATCTATTCTCAAATGAAGGCATCATGAAAAAATTCCACGAACAAAAAAATTC
AAAATAAGTAGTGTGATATC

Downstream 100 bases:

>100_bases
AGGGAAAGTTGGCCCAACTATTGGGTTCTTCTTTCCCTTTTTATACTTATCCATTTTAATAAATTCCGTTAACTATATAA
CAAAGTTTGTACTTATACCT

Product: nucleic acid binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 75; Mature: 75

Protein sequence:

>75_residues
MKALIESIVASLVDYPEEIVINKTEEESKVVYHLTVHPDDVGKVIGKNGRIAKAIRTVVYASKTDGNKRIYLDIM

Sequences:

>Translated_75_residues
MKALIESIVASLVDYPEEIVINKTEEESKVVYHLTVHPDDVGKVIGKNGRIAKAIRTVVYASKTDGNKRIYLDIM
>Mature_75_residues
MKALIESIVASLVDYPEEIVINKTEEESKVVYHLTVHPDDVGKVIGKNGRIAKAIRTVVYASKTDGNKRIYLDIM

Specific function: Unknown

COG id: COG1837

COG function: function code R; Predicted RNA-binding protein (contains KH domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 KH domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1533_OCEIH (Q8ER00)

Other databases:

- EMBL:   BA000028
- RefSeq:   NP_692454.1
- GeneID:   1017812
- GenomeReviews:   BA000028_GR
- KEGG:   oih:OB1533
- NMPDR:   fig|221109.1.peg.1535
- HOGENOM:   HBG668070
- OMA:   QGRIARA
- BioCyc:   OIHE221109:OB1533-MONOMER
- HAMAP:   MF_00088
- InterPro:   IPR009019
- InterPro:   IPR018111
- InterPro:   IPR020627

Pfam domain/function: PF00013 KH_1; SSF54814 KH_prok

EC number: NA

Molecular weight: Translated: 8387; Mature: 8387

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKALIESIVASLVDYPEEIVINKTEEESKVVYHLTVHPDDVGKVIGKNGRIAKAIRTVVY
CHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEEEEECCCHHHHHHCCCCCHHHHHHHHHH
ASKTDGNKRIYLDIM
CCCCCCCCEEEEEEC
>Mature Secondary Structure
MKALIESIVASLVDYPEEIVINKTEEESKVVYHLTVHPDDVGKVIGKNGRIAKAIRTVVY
CHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEEEEECCCHHHHHHCCCCCHHHHHHHHHH
ASKTDGNKRIYLDIM
CCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376