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The map label for this gene is ypmQ [H]

Identifier: 23098852

GI number: 23098852

Start: 1439392

End: 1439964

Strand: Reverse

Name: ypmQ [H]

Synonym: OB1397

Alternate gene names: 23098852

Gene position: 1439964-1439392 (Counterclockwise)

Preceding gene: 23098853

Following gene: 23098851

Centisome position: 39.66

GC content: 33.51

Gene sequence:

>573_bases
ATGAGAAATTTAATATTATTACTTTTATTAAGCATGGTTCTGGTAGGTTGCGGGGAAGATTATAATATTGAATCTACGAT
GTCAGAGCAAGTAGCTGATTTTGAATTTACAAATCAAGACAATGAAGCTGTTTCATTAAGCGACCTTGAAGGCGAATGGT
GGGTTGCCAACTTTATCTTCACTAATTGTACGACTGTCTGTATGCCAATGACATATAATATGTCACAGCTACAAGGAATG
ATTGAATCTGAAGATTTAGATGTTCAATTAATTTCGTTCAGTGTAGATCCTGAAAACGATTCCCCAGAAGTTTTAAAAGA
ATATGCACAAAATTATGATGCTAGCTTTGAGAACTGGTCTTTATTAACTGGATATGATTTTGAAACAATTCGAGAACTAT
CGATAAAATCATTTAAAAACTTTGTTCAAGCTCCTCCCGAAGGCACAGATCAAGTGACACACGGCACCTCATTTTTTCTA
GTTAGTCCTGAAGGTGAAGTAATTAAAAATTACAATGGAATAGAAGAACAAAATATGGAAGCAATTGCAGAAGATTTAAA
TAAGGTACAATAA

Upstream 100 bases:

>100_bases
CTGAAAGTACATAAATAAATGTTCATAAATCGTTCATCACACTATATTTAATTACATGATACAATTACGATAAAACAGTA
TTGAAAGGGAATTTATAAAA

Downstream 100 bases:

>100_bases
ATTTAATAGATAAATTCCCAGAAGATCCCATCATACATTTTGATAGGATCTTCTTAAATTTATTAATATATGTTCATTTT
CAGCTACTTTTTCACTTTAA

Product: hypothetical protein

Products: NA

Alternate protein names: BsSco [H]

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MRNLILLLLLSMVLVGCGEDYNIESTMSEQVADFEFTNQDNEAVSLSDLEGEWWVANFIFTNCTTVCMPMTYNMSQLQGM
IESEDLDVQLISFSVDPENDSPEVLKEYAQNYDASFENWSLLTGYDFETIRELSIKSFKNFVQAPPEGTDQVTHGTSFFL
VSPEGEVIKNYNGIEEQNMEAIAEDLNKVQ

Sequences:

>Translated_190_residues
MRNLILLLLLSMVLVGCGEDYNIESTMSEQVADFEFTNQDNEAVSLSDLEGEWWVANFIFTNCTTVCMPMTYNMSQLQGM
IESEDLDVQLISFSVDPENDSPEVLKEYAQNYDASFENWSLLTGYDFETIRELSIKSFKNFVQAPPEGTDQVTHGTSFFL
VSPEGEVIKNYNGIEEQNMEAIAEDLNKVQ
>Mature_190_residues
MRNLILLLLLSMVLVGCGEDYNIESTMSEQVADFEFTNQDNEAVSLSDLEGEWWVANFIFTNCTTVCMPMTYNMSQLQGM
IESEDLDVQLISFSVDPENDSPEVLKEYAQNYDASFENWSLLTGYDFETIRELSIKSFKNFVQAPPEGTDQVTHGTSFFL
VSPEGEVIKNYNGIEEQNMEAIAEDLNKVQ

Specific function: Neccessary for insertion of copper into the active site of cytochrome c oxidase. May play a role in copper homeostasis or redox signaling [H]

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cell membrane; Lipid-anchor; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 21565; Mature: 21565

Theoretical pI: Translated: 3.55; Mature: 3.55

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNLILLLLLSMVLVGCGEDYNIESTMSEQVADFEFTNQDNEAVSLSDLEGEWWVANFIF
CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCEECCCCCCEEEEECCCCCEEEEHHHH
TNCTTVCMPMTYNMSQLQGMIESEDLDVQLISFSVDPENDSPEVLKEYAQNYDASFENWS
HCHHEEEEECCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCE
LLTGYDFETIRELSIKSFKNFVQAPPEGTDQVTHGTSFFLVSPEGEVIKNYNGIEEQNME
EEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCHHHHCCCCCCHHHHH
AIAEDLNKVQ
HHHHHHHHCC
>Mature Secondary Structure
MRNLILLLLLSMVLVGCGEDYNIESTMSEQVADFEFTNQDNEAVSLSDLEGEWWVANFIF
CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCEECCCCCCEEEEECCCCCEEEEHHHH
TNCTTVCMPMTYNMSQLQGMIESEDLDVQLISFSVDPENDSPEVLKEYAQNYDASFENWS
HCHHEEEEECCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCE
LLTGYDFETIRELSIKSFKNFVQAPPEGTDQVTHGTSFFLVSPEGEVIKNYNGIEEQNME
EEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCHHHHCCCCCCHHHHH
AIAEDLNKVQ
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]