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The map label for this gene is intR [C]

Identifier: 23098689

GI number: 23098689

Start: 1283964

End: 1285100

Strand: Reverse

Name: intR [C]

Synonym: OB1234

Alternate gene names: 23098689

Gene position: 1285100-1283964 (Counterclockwise)

Preceding gene: 23098694

Following gene: 23098688

Centisome position: 35.4

GC content: 35.8

Gene sequence:

>1137_bases
ATGAAGGGATCTATTAAAAAATACGATACAAAGAAAGGAATTCGTTATCTATTTATAATTGATATTAATCAAAGTGGTAA
AGCGAGAAAGCAGAAAAAACTGTCTGGCTTTACGAGAAAGAAAGATGCGGAGGATGCATTAAAGAAGTTAATCATCGAAC
TGGAAAATGACGGCTATCTTGAACCGAGTAAAGAATCATTTCAGTCCTTTTTACAGCACTGGTTCTATACACACTACATT
ACGAGCATTAAAAGAACCACACATTCAAATCGAGATTATCTCATTAAAAAGCATTTAATAGAAGATAATCCATTTGCTGA
AAAAGCTATATCTGACATAACTACAGAAGAAATTGATTACTTTTATCACTACAAGCTTGGTAAAGGATATAGCACGAGTT
ACATTCGCAAAATGCATCAGATGCTACACCTTTCTTTTGCACAAGCTGTGAAATGGAGAAAGATTTCGTATAATCCTGTC
GTGAATACCACCCCGCCAAGAGTACAAACCAAACAGGTTTCTATCTGGTCTAAAGATCAAGTAAAGCAGTTCTTAGAAAC
ATCCAACTTAGAAAGGTTATATATTCTTTTTCTGCTTGCTATTTATACTGGGATGCGCAAAGGAGAGTTGTTAGGGTTAA
AGTGGAGTGACATAAATATGGAAAAGGAATGCATTCATATCCACCGAAACTTATGCTATATACAAAATCAAGGATATTTC
TTTACGACACCAAAAACGGTGAGATCAACACGCGTTATACCTATTTCTTCATTAATCAGCGATCAATTGCAATGTATAAA
AGAAAAACAACAATGTGAGAAGGAATTGGCTGGTCCATCGTATGAAGACAATGATTTAGTTATTTGTACAGCATTAGGAA
AAGTGCAAGATCCCAGAAACGTGACCAGAGTATTTGAACGATGTATAAAAAATGCCAATGTCCCTAAAATTCGCTTCCAC
GATTTACGACATACACACGCTTCGATTCTTATTTCAGAGGGTGTAGATATCGTGAAAGTAAGTAGTCGAATGGGACACAC
TAGCCCAAAGACAACCTTAGATATTTACGCTCACGTTGTTCCGAATACAGATAATGAAGTCGCAACGATCTTTGAAAAAT
CACTCCAAAACTCGTGA

Upstream 100 bases:

>100_bases
TTCAATCCTAACTGCTATCGAATTATAATCAGCTCCATATTTGGGCAAAAAACACTTAACCACTTACTTAACCACTTACT
TACCAGTAGGAGATAAGCAT

Downstream 100 bases:

>100_bases
CTATTTTGTGACTGCTTAACACAATCACCCATCCTTCATCCTTATCCTCAAATACACAAAAAAGCCTGTACCCTTTGTCA
CACAAGGAATACAGACTTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MKGSIKKYDTKKGIRYLFIIDINQSGKARKQKKLSGFTRKKDAEDALKKLIIELENDGYLEPSKESFQSFLQHWFYTHYI
TSIKRTTHSNRDYLIKKHLIEDNPFAEKAISDITTEEIDYFYHYKLGKGYSTSYIRKMHQMLHLSFAQAVKWRKISYNPV
VNTTPPRVQTKQVSIWSKDQVKQFLETSNLERLYILFLLAIYTGMRKGELLGLKWSDINMEKECIHIHRNLCYIQNQGYF
FTTPKTVRSTRVIPISSLISDQLQCIKEKQQCEKELAGPSYEDNDLVICTALGKVQDPRNVTRVFERCIKNANVPKIRFH
DLRHTHASILISEGVDIVKVSSRMGHTSPKTTLDIYAHVVPNTDNEVATIFEKSLQNS

Sequences:

>Translated_378_residues
MKGSIKKYDTKKGIRYLFIIDINQSGKARKQKKLSGFTRKKDAEDALKKLIIELENDGYLEPSKESFQSFLQHWFYTHYI
TSIKRTTHSNRDYLIKKHLIEDNPFAEKAISDITTEEIDYFYHYKLGKGYSTSYIRKMHQMLHLSFAQAVKWRKISYNPV
VNTTPPRVQTKQVSIWSKDQVKQFLETSNLERLYILFLLAIYTGMRKGELLGLKWSDINMEKECIHIHRNLCYIQNQGYF
FTTPKTVRSTRVIPISSLISDQLQCIKEKQQCEKELAGPSYEDNDLVICTALGKVQDPRNVTRVFERCIKNANVPKIRFH
DLRHTHASILISEGVDIVKVSSRMGHTSPKTTLDIYAHVVPNTDNEVATIFEKSLQNS
>Mature_378_residues
MKGSIKKYDTKKGIRYLFIIDINQSGKARKQKKLSGFTRKKDAEDALKKLIIELENDGYLEPSKESFQSFLQHWFYTHYI
TSIKRTTHSNRDYLIKKHLIEDNPFAEKAISDITTEEIDYFYHYKLGKGYSTSYIRKMHQMLHLSFAQAVKWRKISYNPV
VNTTPPRVQTKQVSIWSKDQVKQFLETSNLERLYILFLLAIYTGMRKGELLGLKWSDINMEKECIHIHRNLCYIQNQGYF
FTTPKTVRSTRVIPISSLISDQLQCIKEKQQCEKELAGPSYEDNDLVICTALGKVQDPRNVTRVFERCIKNANVPKIRFH
DLRHTHASILISEGVDIVKVSSRMGHTSPKTTLDIYAHVVPNTDNEVATIFEKSLQNS

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787607, Length=199, Percent_Identity=24.1206030150754, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 43996; Mature: 43996

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGSIKKYDTKKGIRYLFIIDINQSGKARKQKKLSGFTRKKDAEDALKKLIIELENDGYL
CCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHEEECCCCCC
EPSKESFQSFLQHWFYTHYITSIKRTTHSNRDYLIKKHLIEDNPFAEKAISDITTEEIDY
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHCCHHHHHE
FYHYKLGKGYSTSYIRKMHQMLHLSFAQAVKWRKISYNPVVNTTPPRVQTKQVSIWSKDQ
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCEEEEEEECCHHH
VKQFLETSNLERLYILFLLAIYTGMRKGELLGLKWSDINMEKECIHIHRNLCYIQNQGYF
HHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCEEEEECCCEE
FTTPKTVRSTRVIPISSLISDQLQCIKEKQQCEKELAGPSYEDNDLVICTALGKVQDPRN
EECCHHHHCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHH
VTRVFERCIKNANVPKIRFHDLRHTHASILISEGVDIVKVSSRMGHTSPKTTLDIYAHVV
HHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHCCCCEEEEHHHCCCCCCCCEEEEEEEEC
PNTDNEVATIFEKSLQNS
CCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MKGSIKKYDTKKGIRYLFIIDINQSGKARKQKKLSGFTRKKDAEDALKKLIIELENDGYL
CCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHEEECCCCCC
EPSKESFQSFLQHWFYTHYITSIKRTTHSNRDYLIKKHLIEDNPFAEKAISDITTEEIDY
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHCCHHHHHE
FYHYKLGKGYSTSYIRKMHQMLHLSFAQAVKWRKISYNPVVNTTPPRVQTKQVSIWSKDQ
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCEEEEEEECCHHH
VKQFLETSNLERLYILFLLAIYTGMRKGELLGLKWSDINMEKECIHIHRNLCYIQNQGYF
HHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCEEEEECCCEE
FTTPKTVRSTRVIPISSLISDQLQCIKEKQQCEKELAGPSYEDNDLVICTALGKVQDPRN
EECCHHHHCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHH
VTRVFERCIKNANVPKIRFHDLRHTHASILISEGVDIVKVSSRMGHTSPKTTLDIYAHVV
HHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHCCCCEEEEHHHCCCCCCCCEEEEEEEEC
PNTDNEVATIFEKSLQNS
CCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]