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The map label for this gene is 23098685

Identifier: 23098685

GI number: 23098685

Start: 1277926

End: 1278438

Strand: Reverse

Name: 23098685

Synonym: OB1230

Alternate gene names: NA

Gene position: 1278438-1277926 (Counterclockwise)

Preceding gene: 23098686

Following gene: 23098684

Centisome position: 35.21

GC content: 34.11

Gene sequence:

>513_bases
ATGAAATACGGCATTGCAATTTTCCCATCTAAAACAATCCAGGATCAGGCTAACGCATTAAGAAAGCGATATGACCCTCG
TTATTCATTAATACCACCTCACTTAACATTAAAAGAATCTTTTGAAGCTGACGAAGAAACTTTAAGTGAGACAGTTGAAG
AGCTTCGCAAGATCGCAAAAGAAACCGAACCGTTCCATATTCAAATTAATAAAGTAAGTACGTTTGAGCCAGTAACAAAT
ACTATTTATTTCAAAGTTGAACCAATTCAACAACTTAATGACTTGCACACAAAATTACATGAAGGTAAATTTGATGATAA
TCAGACCCATCCATTTGTACCTCATATTACTATTGCCCAAGATTTGGAGCACGATGAGTTTTCCGATATCTTAGGAAGAT
TACAAATGGAAGGTTTCAATCTGGAAGATTATGTTGATCGATTTCAATTACTATACCAATTAGACAATGAATCTTGGACA
GTTTACCAAACATTTGTTTTAGGAAGGGATTAA

Upstream 100 bases:

>100_bases
AGTTTATTTGAATAAGTTTCTATTTCTTGTATATTTTTGCTATACTATAAAAAAACAATTTCTGATTATTAACGAAAGAA
TTGCTATAGGAGGTTACATT

Downstream 100 bases:

>100_bases
TTTTTTGTATGGAAGTCAAAATGGCACAGTCAAGAGAAGAATTAGAACAGGCATATCATATCCGTATGATTGTATTTGTA
GAAGAACAAGAAGTGCCTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MKYGIAIFPSKTIQDQANALRKRYDPRYSLIPPHLTLKESFEADEETLSETVEELRKIAKETEPFHIQINKVSTFEPVTN
TIYFKVEPIQQLNDLHTKLHEGKFDDNQTHPFVPHITIAQDLEHDEFSDILGRLQMEGFNLEDYVDRFQLLYQLDNESWT
VYQTFVLGRD

Sequences:

>Translated_170_residues
MKYGIAIFPSKTIQDQANALRKRYDPRYSLIPPHLTLKESFEADEETLSETVEELRKIAKETEPFHIQINKVSTFEPVTN
TIYFKVEPIQQLNDLHTKLHEGKFDDNQTHPFVPHITIAQDLEHDEFSDILGRLQMEGFNLEDYVDRFQLLYQLDNESWT
VYQTFVLGRD
>Mature_170_residues
MKYGIAIFPSKTIQDQANALRKRYDPRYSLIPPHLTLKESFEADEETLSETVEELRKIAKETEPFHIQINKVSTFEPVTN
TIYFKVEPIQQLNDLHTKLHEGKFDDNQTHPFVPHITIAQDLEHDEFSDILGRLQMEGFNLEDYVDRFQLLYQLDNESWT
VYQTFVLGRD

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0477 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1230_OCEIH (Q8ERS1)

Other databases:

- EMBL:   BA000028
- RefSeq:   NP_692151.1
- ProteinModelPortal:   Q8ERS1
- SMR:   Q8ERS1
- GeneID:   1017402
- GenomeReviews:   BA000028_GR
- KEGG:   oih:OB1230
- NMPDR:   fig|221109.1.peg.1229
- HOGENOM:   HBG313713
- OMA:   ANSYRKR
- ProtClustDB:   PRK13679
- BioCyc:   OIHE221109:OB1230-MONOMER
- GO:   GO:0005622
- HAMAP:   MF_01444
- InterPro:   IPR014051
- InterPro:   IPR009097
- InterPro:   IPR022932

Pfam domain/function: PF02834 2_5_RNA_ligase; SSF55144 Cyc_nuc_Pdiester

EC number: NA

Molecular weight: Translated: 20047; Mature: 20047

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYGIAIFPSKTIQDQANALRKRYDPRYSLIPPHLTLKESFEADEETLSETVEELRKIAK
CCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHH
ETEPFHIQINKVSTFEPVTNTIYFKVEPIQQLNDLHTKLHEGKFDDNQTHPFVPHITIAQ
CCCCEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHH
DLEHDEFSDILGRLQMEGFNLEDYVDRFQLLYQLDNESWTVYQTFVLGRD
HCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCC
>Mature Secondary Structure
MKYGIAIFPSKTIQDQANALRKRYDPRYSLIPPHLTLKESFEADEETLSETVEELRKIAK
CCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHH
ETEPFHIQINKVSTFEPVTNTIYFKVEPIQQLNDLHTKLHEGKFDDNQTHPFVPHITIAQ
CCCCEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHH
DLEHDEFSDILGRLQMEGFNLEDYVDRFQLLYQLDNESWTVYQTFVLGRD
HCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376