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The map label for this gene is ybgA [H]

Identifier: 23098422

GI number: 23098422

Start: 1018324

End: 1019040

Strand: Direct

Name: ybgA [H]

Synonym: OB0967

Alternate gene names: 23098422

Gene position: 1018324-1019040 (Clockwise)

Preceding gene: 23098420

Following gene: 23098423

Centisome position: 28.05

GC content: 30.4

Gene sequence:

>717_bases
TTGGAAAATAAAGAAATGCTGATTGTAGATGATCTTATGAATCAAATAAAACAAAAAAAGATACAACCAGGAGAAAAATT
CCCCTCTGAAAATGCCTTAACAGAAATGTATAAAGTCCCAAGAATGACAGTAAGAAATGCATTTAATACTTTAGAAGAGC
GGGGATTTATTCAAGCTTCCCAAGGAAAGGGTCGCTTTCTAAAAGGAAAATCAATTCAAATAAAGTTGCCTTTAACTGGA
GATACGAGCTTCACAGAAAAAATGGAGCAGATGGGATATAATTTACAAACGAAAAATGTCTTGTTCAAAAAAGTTGACTA
TAATCCATCTATATTTAATCGATTGCATGCTAGTGAAAACGAAAATGTCTATCAGGTTGTAAGATTACGTTATATTAATG
GAGAGATTATTGCCATTCACTATTCTTTCATAAAGGAATCTACGGTTCCAAAGATTGTAGAAGAAGGACCAGAAATTTTA
TCTATGTTTCGTTTTTATAGGCAACAAGGATTTAAGAAATTTACGAGTAACAAATCAATTTTAAGTGTTACTTTTCCAAC
TTTAGAAGAGCAACAATTATTGGAATGTAAGAGTATGATTCCATTAATTGTAGTCGAAACCGACTGCACGAATAAAGAAA
CCAATCAAATCTTAGAATATACGAAAATACTTTATAGAAGTGATACATTTAAATATGATATATCTACTATTACATAA

Upstream 100 bases:

>100_bases
TGCTAGCTCTCATTATTATTCATGAAGTTATCTTTGTTTATATAGTAGAAATTCATGATATTATAAAAGAAATGATATAG
GTACCCGAGAGGAAGATTCT

Downstream 100 bases:

>100_bases
GCAAGGATCAATCTAACGTCAGAGATTGATCCTTGCTTTTTTTGTTGAATGCATTGTTCTGATCTCCCATGACCTTCTTT
AATAAATCCCCGACTTTATA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MENKEMLIVDDLMNQIKQKKIQPGEKFPSENALTEMYKVPRMTVRNAFNTLEERGFIQASQGKGRFLKGKSIQIKLPLTG
DTSFTEKMEQMGYNLQTKNVLFKKVDYNPSIFNRLHASENENVYQVVRLRYINGEIIAIHYSFIKESTVPKIVEEGPEIL
SMFRFYRQQGFKKFTSNKSILSVTFPTLEEQQLLECKSMIPLIVVETDCTNKETNQILEYTKILYRSDTFKYDISTIT

Sequences:

>Translated_238_residues
MENKEMLIVDDLMNQIKQKKIQPGEKFPSENALTEMYKVPRMTVRNAFNTLEERGFIQASQGKGRFLKGKSIQIKLPLTG
DTSFTEKMEQMGYNLQTKNVLFKKVDYNPSIFNRLHASENENVYQVVRLRYINGEIIAIHYSFIKESTVPKIVEEGPEIL
SMFRFYRQQGFKKFTSNKSILSVTFPTLEEQQLLECKSMIPLIVVETDCTNKETNQILEYTKILYRSDTFKYDISTIT
>Mature_238_residues
MENKEMLIVDDLMNQIKQKKIQPGEKFPSENALTEMYKVPRMTVRNAFNTLEERGFIQASQGKGRFLKGKSIQIKLPLTG
DTSFTEKMEQMGYNLQTKNVLFKKVDYNPSIFNRLHASENENVYQVVRLRYINGEIIAIHYSFIKESTVPKIVEEGPEIL
SMFRFYRQQGFKKFTSNKSILSVTFPTLEEQQLLECKSMIPLIVVETDCTNKETNQILEYTKILYRSDTFKYDISTIT

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082252, Length=191, Percent_Identity=26.1780104712042, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1786950, Length=227, Percent_Identity=22.0264317180617, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790540, Length=213, Percent_Identity=25.3521126760563, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788418, Length=219, Percent_Identity=23.2876712328767, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27775; Mature: 27775

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENKEMLIVDDLMNQIKQKKIQPGEKFPSENALTEMYKVPRMTVRNAFNTLEERGFIQAS
CCCCCEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCEEEC
QGKGRFLKGKSIQIKLPLTGDTSFTEKMEQMGYNLQTKNVLFKKVDYNPSIFNRLHASEN
CCCCCEECCCEEEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHCCCC
ENVYQVVRLRYINGEIIAIHYSFIKESTVPKIVEEGPEILSMFRFYRQQGFKKFTSNKSI
CCCEEEEEEEEECCEEEEEEEHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCE
LSVTFPTLEEQQLLECKSMIPLIVVETDCTNKETNQILEYTKILYRSDTFKYDISTIT
EEEECCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC
>Mature Secondary Structure
MENKEMLIVDDLMNQIKQKKIQPGEKFPSENALTEMYKVPRMTVRNAFNTLEERGFIQAS
CCCCCEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCEEEC
QGKGRFLKGKSIQIKLPLTGDTSFTEKMEQMGYNLQTKNVLFKKVDYNPSIFNRLHASEN
CCCCCEECCCEEEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHCCCC
ENVYQVVRLRYINGEIIAIHYSFIKESTVPKIVEEGPEILSMFRFYRQQGFKKFTSNKSI
CCCEEEEEEEEECCEEEEEEEHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCE
LSVTFPTLEEQQLLECKSMIPLIVVETDCTNKETNQILEYTKILYRSDTFKYDISTIT
EEEECCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]