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The map label for this gene is ykoF [H]

Identifier: 23098261

GI number: 23098261

Start: 860361

End: 860951

Strand: Reverse

Name: ykoF [H]

Synonym: OB0806

Alternate gene names: 23098261

Gene position: 860951-860361 (Counterclockwise)

Preceding gene: 23098262

Following gene: 23098260

Centisome position: 23.71

GC content: 35.19

Gene sequence:

>591_bases
ATGACAAACATTTGCAGTACAAGCAGAATTACAGGATGCCAATTTACTTTATTTCCGATGAGTAGTGATTTTGTCGATAT
TATTTTATCTACCCTTGAGGAAGTGGATACGTCAAAAGTATGGAAAGAAACAGATGATGTTACTACATGTATTCGCGGAA
AATCGATTCATATCTTTGATGTGACAAAAGCTATTTTCTTACATGCAGCAAAAACTGGAGAACATGTAGCCATGAGTGGA
ACTTTTTCCATTGGATGCCCAGGTGATTCTTCTGGTGATGTTTACATGGAGGAGTCTGATAAATTAATGAACGAATCTAA
TTCAAATAGTTTAAAGCAGCAAGCAGGATGTAAATTTTCTCTATACCCGCTTGGCCGTGAAGATTATATGGATAAAATCT
ATGAACAAATTGATTTATCTAAAAATACAGGTGTACAGGTTAGTCATTCTCATTATGCAACACGGCTAGACGGAGATGTA
AATGATATTTTCTCTGCACTACAACAATCCTTTGACAATGTACGAGAAGTTGTATCACATGTGACGATGACATTTACTAT
ATCTGCAAATAGTCCGTCAAATAAAGGTTAA

Upstream 100 bases:

>100_bases
TTGTATGAATATATATTTACTTTTTTTCATTCATATATACAAACTGCATTCCCTTAGGAGTGCAGTTTTTTTATTGCCCA
AAAATAAGGAGGAATACACG

Downstream 100 bases:

>100_bases
AAGGTGGATATCTATGACGAAAAACTGGAAATTAAAAGATGTTGTTTTAATGTCAATGCTTGGAGTAGTTTTCGGGTTAA
TTTATCTTGCTTTCTTTGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MTNICSTSRITGCQFTLFPMSSDFVDIILSTLEEVDTSKVWKETDDVTTCIRGKSIHIFDVTKAIFLHAAKTGEHVAMSG
TFSIGCPGDSSGDVYMEESDKLMNESNSNSLKQQAGCKFSLYPLGREDYMDKIYEQIDLSKNTGVQVSHSHYATRLDGDV
NDIFSALQQSFDNVREVVSHVTMTFTISANSPSNKG

Sequences:

>Translated_196_residues
MTNICSTSRITGCQFTLFPMSSDFVDIILSTLEEVDTSKVWKETDDVTTCIRGKSIHIFDVTKAIFLHAAKTGEHVAMSG
TFSIGCPGDSSGDVYMEESDKLMNESNSNSLKQQAGCKFSLYPLGREDYMDKIYEQIDLSKNTGVQVSHSHYATRLDGDV
NDIFSALQQSFDNVREVVSHVTMTFTISANSPSNKG
>Mature_195_residues
TNICSTSRITGCQFTLFPMSSDFVDIILSTLEEVDTSKVWKETDDVTTCIRGKSIHIFDVTKAIFLHAAKTGEHVAMSGT
FSIGCPGDSSGDVYMEESDKLMNESNSNSLKQQAGCKFSLYPLGREDYMDKIYEQIDLSKNTGVQVSHSHYATRLDGDVN
DIFSALQQSFDNVREVVSHVTMTFTISANSPSNKG

Specific function: Part of the ABC transporter complex ykoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. Could also transport other HMP-containing products. Binds thiamine via its HMP moiety [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015835
- InterPro:   IPR016198
- InterPro:   IPR011522 [H]

Pfam domain/function: PF07615 Ykof [H]

EC number: NA

Molecular weight: Translated: 21637; Mature: 21506

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNICSTSRITGCQFTLFPMSSDFVDIILSTLEEVDTSKVWKETDDVTTCIRGKSIHIFD
CCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEEE
VTKAIFLHAAKTGEHVAMSGTFSIGCPGDSSGDVYMEESDKLMNESNSNSLKQQAGCKFS
HHHHHHHHHCCCCCEEEEECEEEEECCCCCCCCEEECCCHHHHCCCCCCHHHHHCCCEEE
LYPLGREDYMDKIYEQIDLSKNTGVQVSHSHYATRLDGDVNDIFSALQQSFDNVREVVSH
EEECCHHHHHHHHHHHHCCCCCCCEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHH
VTMTFTISANSPSNKG
EEEEEEEECCCCCCCC
>Mature Secondary Structure 
TNICSTSRITGCQFTLFPMSSDFVDIILSTLEEVDTSKVWKETDDVTTCIRGKSIHIFD
CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEEE
VTKAIFLHAAKTGEHVAMSGTFSIGCPGDSSGDVYMEESDKLMNESNSNSLKQQAGCKFS
HHHHHHHHHCCCCCEEEEECEEEEECCCCCCCCEEECCCHHHHCCCCCCHHHHHCCCEEE
LYPLGREDYMDKIYEQIDLSKNTGVQVSHSHYATRLDGDVNDIFSALQQSFDNVREVVSH
EEECCHHHHHHHHHHHHCCCCCCCEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHH
VTMTFTISANSPSNKG
EEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]