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The map label for this gene is yodJ [H]

Identifier: 23097985

GI number: 23097985

Start: 562261

End: 563280

Strand: Reverse

Name: yodJ [H]

Synonym: OB0530

Alternate gene names: 23097985

Gene position: 563280-562261 (Counterclockwise)

Preceding gene: 23097986

Following gene: 23097983

Centisome position: 15.52

GC content: 37.55

Gene sequence:

>1020_bases
ATGCAACGTTTGCTTTGGTTGTTATTGATCGGTGTACTACTACTTTTCATAAGCGCATGCCAATCTAATGATGATAACCA
TTCATCTTCACAAGAAACTTTAGAAAACCCAACAAATGATGAGGATGTAACAGCTAATCAAAATAATAAAGAGTTACCAG
AAACCCCTTTACAAAAGCTAGATCAAGGAGAAGAGGTAGATGCTCTTCAGTATTTTCTTGAACAGTTAGGGTACAACTTT
TCTGAACAAGGTAACTATAACGAACAGGTGACTTGGGCAATAACTGATTTTCAACTACAACAAGAGGATTTACTCGTTTC
TGGGGTCTATAATGAGGATACCAAACAAAAAATAGAGGAAGTTATCCAATCCGAAAATTCGTATAAACCAGGTGAAGGTC
TACCAGCACCGACAGAACCTGCATTTACAGATGCGGGTACGGAAATCATTTCAAACCCATACGATCAACTAGCTCTTGTA
AATAAAGAATTTTCATTGCCTGCAGACTATATTCCAGATGATTTAGTTATACCTAATGTTCCTTTCCCATTCACGGAGGA
CATTCCAAAAAAATATATGCGCCAAGCTGCCGCTGATGCATTAGAAGAATTGTTTGCAGATGCGCTAGAAGAAAATTTAG
AGCTTTACGCACAATCTGGATACCGATCATACGACCGCCAAGATAACATTTTTGCAGCAAATGCCGCTGAAAATGGTGAA
AAGCATGCAAACACATTTAGTGCTCGACCTGGAGAGAGTGAACATCAAACCGGACTGGCTATGGATGTAACAAGTCCAGA
AGTTAACTTTAATCTAGTAACGGAGTTTGGTGAAACAAAAGAAGGAAAATGGGTAAAAGAAAATGCCGCAAATTATGGTT
TTATCATTCGATTCCCAGAAGGTAAAGAAGATATTACTAAATATCAATTTGAACCTTGGCATTTACGTTATGTAGGACAT
AAAGCAGCAGAAGAAATCATGAATCAAGACATTACGTTAGAAGAATACCTGGAGAAATAA

Upstream 100 bases:

>100_bases
ATCAAGGTGATGTCCTTATCCTTTATTAAGCTTTTTTTAGTTGACGGACATTTCTCACCTGGAAAAGAATAAGAGATAGT
ACGGGTTAGGAGAGTTAATT

Downstream 100 bases:

>100_bases
ATCATAAACGTCCTCTAAAAATTAGGGGGCGTTTTTTAGACGCAGAAAAAATATGTAACCTCAAACTCCAAGCATATCTT
TTATGCATGCTTAGAAGAGG

Product: carboxypeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MQRLLWLLLIGVLLLFISACQSNDDNHSSSQETLENPTNDEDVTANQNNKELPETPLQKLDQGEEVDALQYFLEQLGYNF
SEQGNYNEQVTWAITDFQLQQEDLLVSGVYNEDTKQKIEEVIQSENSYKPGEGLPAPTEPAFTDAGTEIISNPYDQLALV
NKEFSLPADYIPDDLVIPNVPFPFTEDIPKKYMRQAAADALEELFADALEENLELYAQSGYRSYDRQDNIFAANAAENGE
KHANTFSARPGESEHQTGLAMDVTSPEVNFNLVTEFGETKEGKWVKENAANYGFIIRFPEGKEDITKYQFEPWHLRYVGH
KAAEEIMNQDITLEEYLEK

Sequences:

>Translated_339_residues
MQRLLWLLLIGVLLLFISACQSNDDNHSSSQETLENPTNDEDVTANQNNKELPETPLQKLDQGEEVDALQYFLEQLGYNF
SEQGNYNEQVTWAITDFQLQQEDLLVSGVYNEDTKQKIEEVIQSENSYKPGEGLPAPTEPAFTDAGTEIISNPYDQLALV
NKEFSLPADYIPDDLVIPNVPFPFTEDIPKKYMRQAAADALEELFADALEENLELYAQSGYRSYDRQDNIFAANAAENGE
KHANTFSARPGESEHQTGLAMDVTSPEVNFNLVTEFGETKEGKWVKENAANYGFIIRFPEGKEDITKYQFEPWHLRYVGH
KAAEEIMNQDITLEEYLEK
>Mature_339_residues
MQRLLWLLLIGVLLLFISACQSNDDNHSSSQETLENPTNDEDVTANQNNKELPETPLQKLDQGEEVDALQYFLEQLGYNF
SEQGNYNEQVTWAITDFQLQQEDLLVSGVYNEDTKQKIEEVIQSENSYKPGEGLPAPTEPAFTDAGTEIISNPYDQLALV
NKEFSLPADYIPDDLVIPNVPFPFTEDIPKKYMRQAAADALEELFADALEENLELYAQSGYRSYDRQDNIFAANAAENGE
KHANTFSARPGESEHQTGLAMDVTSPEVNFNLVTEFGETKEGKWVKENAANYGFIIRFPEGKEDITKYQFEPWHLRYVGH
KAAEEIMNQDITLEEYLEK

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 38532; Mature: 38532

Theoretical pI: Translated: 3.93; Mature: 3.93

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRLLWLLLIGVLLLFISACQSNDDNHSSSQETLENPTNDEDVTANQNNKELPETPLQKL
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHC
DQGEEVDALQYFLEQLGYNFSEQGNYNEQVTWAITDFQLQQEDLLVSGVYNEDTKQKIEE
CCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCEECCCCEEEECCCCCHHHHHHHH
VIQSENSYKPGEGLPAPTEPAFTDAGTEIISNPYDQLALVNKEFSLPADYIPDDLVIPNV
HHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
PFPFTEDIPKKYMRQAAADALEELFADALEENLELYAQSGYRSYDRQDNIFAANAAENGE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCH
KHANTFSARPGESEHQTGLAMDVTSPEVNFNLVTEFGETKEGKWVKENAANYGFIIRFPE
HHCCCCCCCCCCCHHCCCEEEECCCCCCCEEEEECCCCCCCCCEEHHCCCCCEEEEECCC
GKEDITKYQFEPWHLRYVGHKAAEEIMNQDITLEEYLEK
CHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCCHHHHHCC
>Mature Secondary Structure
MQRLLWLLLIGVLLLFISACQSNDDNHSSSQETLENPTNDEDVTANQNNKELPETPLQKL
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHC
DQGEEVDALQYFLEQLGYNFSEQGNYNEQVTWAITDFQLQQEDLLVSGVYNEDTKQKIEE
CCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCEECCCCEEEECCCCCHHHHHHHH
VIQSENSYKPGEGLPAPTEPAFTDAGTEIISNPYDQLALVNKEFSLPADYIPDDLVIPNV
HHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
PFPFTEDIPKKYMRQAAADALEELFADALEENLELYAQSGYRSYDRQDNIFAANAAENGE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCH
KHANTFSARPGESEHQTGLAMDVTSPEVNFNLVTEFGETKEGKWVKENAANYGFIIRFPE
HHCCCCCCCCCCCHHCCCEEEECCCCCCCEEEEECCCCCCCCCEEHHCCCCCEEEEECCC
GKEDITKYQFEPWHLRYVGHKAAEEIMNQDITLEEYLEK
CHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]