Click here to switch to the map view.

The map label for this gene is ypdB [C]

Identifier: 23097701

GI number: 23097701

Start: 277525

End: 278397

Strand: Direct

Name: ypdB [C]

Synonym: OB0246

Alternate gene names: 23097701

Gene position: 277525-278397 (Clockwise)

Preceding gene: 23097699

Following gene: 23097702

Centisome position: 7.64

GC content: 32.3

Gene sequence:

>873_bases
GTGTTTTTTGAATTAATTTCTGGAAAGCAATACCCTTCCAGTGGTCACATTAACCGATCTACTGATTCGTTACTTGTAGA
AAGTAAAGATGATGGCTTATATGATGATTTAACCGTACAAGGTTACTTGAAGTTTTTTAAAAATATTGCAGACTTTAGAG
ATCCTCTAGAAGAATATATTGCAACATTTTCTCTATCTGATGTTTGGAAAACGAAAATCAAGAAATTGACTAAGGATCAG
AGGAAAAGAGTTAGTTTGTATCGGATGTTTTTATTCACTCCGGAAGTCGTATTAATTGAGGATCCTTTTAATGATCTAAC
AGATGAAGGTATAGAACTTTATCTGAAATCATTGGAACAACTTCGTACAAACAATATTGCCACATTATTTACTTCTAACT
ACACGGAAGACTTACTTCTCTTAAGTAATGAGGTTTACCGTTATCATCGACTAACTGGATTAGAAAAGACGGATTTAGCT
GAGGAAACAGATGGAGACACTCGTAAAAACGATGAGAGTGAAAGTAACCAACCCAAAAATGTTTTCAAAGTTACGTGTAA
ATTAGAAGATAAAACTATCTTTTTTAGTCCGGATGAGATTGACTTTATCGAGAGTATTAACAGTGTAAGTAATATTCGAA
TAGATGATGAATATTTCCCTACAGATTTAACGATGAATGAATTGGAAAATAAGTTGAGTAAATTTGGATTTTTTAGATGC
CATCGATCGTATTTAGTTAATCTTCAGCGTGTGTCGGAATTAATAAGTTACTCAAAAAATAGTTATACCTTAATATTAAA
AGGAAATCCAAGCGCGAAGCTCCCTTTGTCTAGAAATCGATTGGAAGAAATGAAGCAATTAATAGAATTTTAG

Upstream 100 bases:

>100_bases
TTAAAACAGGACGGAAATCGAACTGTTCTAAAGAATATTAATTTAACTATAAAAAACTCATCTCAAATTGGGATTAAAAT
GTCTGGTGAAGAAAGCAAGT

Downstream 100 bases:

>100_bases
CGTACAGTTGAGGTTGAAATGAGATCATTTCAGCCTCATTTTGGTACATTTGGGTTTTTAAATGTACTGTTCAAGGGATT
TATACGACTTTTCTATATTT

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: Autolysin Response Regulator; Response Regulator; ABC Transporter Related Protein; Two Component Transcriptional Regulator LytTR Family; LytR Family Transcriptional Regulator; Sensory Transduction Protein Lytt; Response Regulator Receiver Domain-Containing Protein; LytR/AlgR Family Transcriptional Regulator; Two-Component Response Regulator

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MFFELISGKQYPSSGHINRSTDSLLVESKDDGLYDDLTVQGYLKFFKNIADFRDPLEEYIATFSLSDVWKTKIKKLTKDQ
RKRVSLYRMFLFTPEVVLIEDPFNDLTDEGIELYLKSLEQLRTNNIATLFTSNYTEDLLLLSNEVYRYHRLTGLEKTDLA
EETDGDTRKNDESESNQPKNVFKVTCKLEDKTIFFSPDEIDFIESINSVSNIRIDDEYFPTDLTMNELENKLSKFGFFRC
HRSYLVNLQRVSELISYSKNSYTLILKGNPSAKLPLSRNRLEEMKQLIEF

Sequences:

>Translated_290_residues
MFFELISGKQYPSSGHINRSTDSLLVESKDDGLYDDLTVQGYLKFFKNIADFRDPLEEYIATFSLSDVWKTKIKKLTKDQ
RKRVSLYRMFLFTPEVVLIEDPFNDLTDEGIELYLKSLEQLRTNNIATLFTSNYTEDLLLLSNEVYRYHRLTGLEKTDLA
EETDGDTRKNDESESNQPKNVFKVTCKLEDKTIFFSPDEIDFIESINSVSNIRIDDEYFPTDLTMNELENKLSKFGFFRC
HRSYLVNLQRVSELISYSKNSYTLILKGNPSAKLPLSRNRLEEMKQLIEF
>Mature_290_residues
MFFELISGKQYPSSGHINRSTDSLLVESKDDGLYDDLTVQGYLKFFKNIADFRDPLEEYIATFSLSDVWKTKIKKLTKDQ
RKRVSLYRMFLFTPEVVLIEDPFNDLTDEGIELYLKSLEQLRTNNIATLFTSNYTEDLLLLSNEVYRYHRLTGLEKTDLA
EETDGDTRKNDESESNQPKNVFKVTCKLEDKTIFFSPDEIDFIESINSVSNIRIDDEYFPTDLTMNELENKLSKFGFFRC
HRSYLVNLQRVSELISYSKNSYTLILKGNPSAKLPLSRNRLEEMKQLIEF

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33953; Mature: 33953

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFELISGKQYPSSGHINRSTDSLLVESKDDGLYDDLTVQGYLKFFKNIADFRDPLEEYI
CCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ATFSLSDVWKTKIKKLTKDQRKRVSLYRMFLFTPEVVLIEDPFNDLTDEGIELYLKSLEQ
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHH
LRTNNIATLFTSNYTEDLLLLSNEVYRYHRLTGLEKTDLAEETDGDTRKNDESESNQPKN
HHHCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCE
VFKVTCKLEDKTIFFSPDEIDFIESINSVSNIRIDDEYFPTDLTMNELENKLSKFGFFRC
EEEEEEEEECCEEEECCCCHHHHHHHHHHHCEEECCCCCCCCCCHHHHHHHHHHHHHHHH
HRSYLVNLQRVSELISYSKNSYTLILKGNPSAKLPLSRNRLEEMKQLIEF
HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MFFELISGKQYPSSGHINRSTDSLLVESKDDGLYDDLTVQGYLKFFKNIADFRDPLEEYI
CCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ATFSLSDVWKTKIKKLTKDQRKRVSLYRMFLFTPEVVLIEDPFNDLTDEGIELYLKSLEQ
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHH
LRTNNIATLFTSNYTEDLLLLSNEVYRYHRLTGLEKTDLAEETDGDTRKNDESESNQPKN
HHHCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCE
VFKVTCKLEDKTIFFSPDEIDFIESINSVSNIRIDDEYFPTDLTMNELENKLSKFGFFRC
EEEEEEEEECCEEEECCCCHHHHHHHHHHHCEEECCCCCCCCCCHHHHHHHHHHHHHHHH
HRSYLVNLQRVSELISYSKNSYTLILKGNPSAKLPLSRNRLEEMKQLIEF
HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA